Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   I6L26_RS16960 Genome accession   NZ_CP077303
Coordinates   3586507..3587316 (-) Length   269 a.a.
NCBI ID   WP_005067126.1    Uniprot ID   A0A009NM66
Organism   Acinetobacter pittii strain FDAARGOS 1396     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3581507..3592316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L26_RS16945 (I6L26_16945) pilE 3581726..3582151 (-) 426 WP_025464177.1 type IV pilin protein Machinery gene
  I6L26_RS16950 (I6L26_16950) pilY2 3582148..3582630 (-) 483 WP_005804550.1 type IV pilin protein Machinery gene
  I6L26_RS16955 (I6L26_16955) pilY1 3582641..3586495 (-) 3855 WP_005804549.1 PilC/PilY family type IV pilus protein Machinery gene
  I6L26_RS16960 (I6L26_16960) pilX 3586507..3587316 (-) 810 WP_005067126.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  I6L26_RS16965 (I6L26_16965) pilW 3587313..3588314 (-) 1002 WP_005804547.1 PilW family protein Machinery gene
  I6L26_RS16970 (I6L26_16970) pilV 3588314..3588874 (-) 561 WP_078210318.1 type IV pilus modification protein PilV Machinery gene
  I6L26_RS16975 (I6L26_16975) fimU 3588868..3589341 (-) 474 WP_005804545.1 pilus assembly FimT family protein Machinery gene
  I6L26_RS16980 (I6L26_16980) ispH 3589511..3590461 (-) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  I6L26_RS16985 (I6L26_16985) gmk 3590584..3591213 (+) 630 WP_005804544.1 guanylate kinase -
  I6L26_RS16990 (I6L26_16990) rpoZ 3591286..3591564 (+) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  I6L26_RS16995 (I6L26_16995) - 3591636..3591758 (+) 123 Protein_3316 hypothetical protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 28531.35 Da        Isoelectric Point: 7.7238

>NTDB_id=580713 I6L26_RS16960 WP_005067126.1 3586507..3587316(-) (pilX) [Acinetobacter pittii strain FDAARGOS 1396]
MTHLIHKSRSKEKGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNPTTLTNITNVI
GAALKEHESNPGAEYNFCYKPVSTATNFAQTRGASLLRAGSANNAVVEDGGVAGFCNLTTDYGSNRQAVVTQVAVSVPTD
AASDIPGSNLPRGTNTSEGTQLPKSMLSTQRIRVITTAFLPAYASTSIETLQRDCLSTSSAKISDNFDTALTAKQTLAEC
LANHNVPFSTQVQEFNYTNKLTQITAPGS

Nucleotide


Download         Length: 810 bp        

>NTDB_id=580713 I6L26_RS16960 WP_005067126.1 3586507..3587316(-) (pilX) [Acinetobacter pittii strain FDAARGOS 1396]
ATGACCCATTTAATTCATAAGAGTAGATCTAAGGAAAAAGGGGCAACCCTTATTGTTGTGCTTATTATTTTATTGATTGT
TATTTCTGTAGGCGTTTTAGCAATAAGAGTGGCTATTGTTTCTTTAAAAGTTGCTACCAATAGCCAAGTTAGCCAATTAA
ATTTTCAGTCATCTGACACTCCTTTAGAACTCATTGTGCAGATGAATCCTACCACCCTAACTAATATTACTAATGTGATT
GGTGCCGCGCTTAAAGAGCATGAAAGTAATCCTGGAGCGGAATACAACTTTTGTTATAAGCCTGTTTCTACAGCAACAAA
TTTTGCTCAGACCAGAGGTGCAAGTTTACTTCGAGCAGGAAGCGCCAATAATGCGGTTGTCGAAGATGGCGGCGTGGCGG
GTTTCTGCAATTTAACAACTGACTATGGAAGTAATCGTCAAGCAGTGGTTACCCAAGTTGCTGTAAGTGTTCCAACAGAT
GCTGCTAGCGATATTCCAGGCTCAAATTTACCACGAGGAACAAATACCTCGGAAGGTACGCAACTTCCTAAAAGCATGTT
GTCTACGCAACGTATTCGAGTGATTACAACTGCTTTTTTGCCAGCCTATGCATCTACCTCTATTGAAACTTTACAAAGAG
ATTGTTTAAGCACGAGTTCGGCAAAAATTAGCGATAATTTTGATACCGCATTAACGGCTAAACAAACATTGGCGGAGTGT
TTGGCAAATCATAACGTGCCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAACTCACTCAAATTACGGCACC
AGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009NM66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

89.706

100

0.907