Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   I6L26_RS16975 Genome accession   NZ_CP077303
Coordinates   3588868..3589341 (-) Length   157 a.a.
NCBI ID   WP_005804545.1    Uniprot ID   A0A009N256
Organism   Acinetobacter pittii strain FDAARGOS 1396     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3583868..3594341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L26_RS16960 (I6L26_16960) pilX 3586507..3587316 (-) 810 WP_005067126.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  I6L26_RS16965 (I6L26_16965) pilW 3587313..3588314 (-) 1002 WP_005804547.1 PilW family protein Machinery gene
  I6L26_RS16970 (I6L26_16970) pilV 3588314..3588874 (-) 561 WP_078210318.1 type IV pilus modification protein PilV Machinery gene
  I6L26_RS16975 (I6L26_16975) fimU 3588868..3589341 (-) 474 WP_005804545.1 pilus assembly FimT family protein Machinery gene
  I6L26_RS16980 (I6L26_16980) ispH 3589511..3590461 (-) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  I6L26_RS16985 (I6L26_16985) gmk 3590584..3591213 (+) 630 WP_005804544.1 guanylate kinase -
  I6L26_RS16990 (I6L26_16990) rpoZ 3591286..3591564 (+) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  I6L26_RS16995 (I6L26_16995) - 3591636..3591758 (+) 123 Protein_3316 hypothetical protein -
  I6L26_RS17000 (I6L26_17000) spoT 3591774..3593879 (+) 2106 WP_002116807.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16912.60 Da        Isoelectric Point: 7.7942

>NTDB_id=580716 I6L26_RS16975 WP_005804545.1 3588868..3589341(-) (fimU) [Acinetobacter pittii strain FDAARGOS 1396]
MRGIIPQDGFTLVELMVTIAVMAIIAMMAAPSMSNLLESKRLDGNQRDLINTLSEAKSQAILGRQDVSINLNSTALNTPT
SLNWKADSNNSLELKNIAADGTQSSLTATTLTFNANGVITNITQDTILSICNSKINKKKILILTKLGTLIFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=580716 I6L26_RS16975 WP_005804545.1 3588868..3589341(-) (fimU) [Acinetobacter pittii strain FDAARGOS 1396]
ATGAGGGGAATTATTCCGCAAGACGGGTTCACCTTGGTTGAGCTTATGGTGACGATTGCGGTCATGGCTATTATCGCGAT
GATGGCTGCACCATCTATGTCGAATTTATTAGAAAGCAAACGACTAGATGGAAATCAACGAGATCTAATCAATACTTTAT
CGGAAGCAAAGAGCCAAGCCATACTTGGTCGACAAGACGTTTCTATTAATCTGAATTCAACAGCTTTAAATACTCCCACT
TCCTTGAATTGGAAAGCTGATTCCAATAACAGTCTTGAACTTAAAAATATCGCTGCTGATGGTACGCAGAGTTCATTAAC
AGCGACGACTTTAACTTTTAATGCGAATGGGGTAATAACCAATATCACCCAAGACACAATTTTATCTATCTGTAATTCAA
AAATAAATAAAAAGAAAATTCTTATTTTAACAAAGCTTGGCACATTAATTTTTAAAGCTGAGGAGACATGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009N256

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

87.898

100

0.879