Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   I6L26_RS16970 Genome accession   NZ_CP077303
Coordinates   3588314..3588874 (-) Length   186 a.a.
NCBI ID   WP_078210318.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS 1396     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3583314..3593874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L26_RS16960 (I6L26_16960) pilX 3586507..3587316 (-) 810 WP_005067126.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  I6L26_RS16965 (I6L26_16965) pilW 3587313..3588314 (-) 1002 WP_005804547.1 PilW family protein Machinery gene
  I6L26_RS16970 (I6L26_16970) pilV 3588314..3588874 (-) 561 WP_078210318.1 type IV pilus modification protein PilV Machinery gene
  I6L26_RS16975 (I6L26_16975) fimU 3588868..3589341 (-) 474 WP_005804545.1 pilus assembly FimT family protein Machinery gene
  I6L26_RS16980 (I6L26_16980) ispH 3589511..3590461 (-) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  I6L26_RS16985 (I6L26_16985) gmk 3590584..3591213 (+) 630 WP_005804544.1 guanylate kinase -
  I6L26_RS16990 (I6L26_16990) rpoZ 3591286..3591564 (+) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  I6L26_RS16995 (I6L26_16995) - 3591636..3591758 (+) 123 Protein_3316 hypothetical protein -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 19855.89 Da        Isoelectric Point: 7.9105

>NTDB_id=580715 I6L26_RS16970 WP_078210318.1 3588314..3588874(-) (pilV) [Acinetobacter pittii strain FDAARGOS 1396]
MLMQGSKQKAQVGVGLLEVLVALILIAIGVLGYVALQVRAMDASSEALSKSQAIMIMRGLAENIRVNSSQASQYPAFVRS
YSNYSSTTAAPTLCFNTACTPSQLAQFDAYQAAKNADQLGMKITMTNCPGVTSTMAQQRQCLFVFWGKTAPVITTNEGVT
SADVSSCMSTNGVYVNNSNCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=580715 I6L26_RS16970 WP_078210318.1 3588314..3588874(-) (pilV) [Acinetobacter pittii strain FDAARGOS 1396]
ATGTTAATGCAGGGTTCTAAACAAAAAGCTCAAGTCGGGGTGGGTTTATTAGAAGTGTTGGTTGCCTTAATTTTAATTGC
GATAGGGGTTTTAGGATATGTTGCCTTGCAAGTTCGGGCTATGGATGCTTCTTCAGAGGCATTAAGCAAATCTCAAGCGA
TTATGATCATGAGAGGATTAGCAGAAAACATTCGCGTAAATAGTTCTCAAGCTAGTCAGTATCCCGCATTTGTCCGTAGT
TATAGCAATTATTCATCTACCACCGCAGCTCCTACGTTGTGTTTCAATACAGCTTGTACACCTTCTCAGCTTGCCCAATT
TGATGCATATCAAGCAGCAAAAAATGCTGATCAACTTGGCATGAAAATCACAATGACAAATTGCCCAGGGGTTACAAGCA
CGATGGCCCAGCAGAGGCAATGTCTTTTTGTTTTTTGGGGAAAAACCGCTCCAGTAATTACAACAAATGAGGGAGTCACG
AGCGCGGATGTGTCGAGCTGTATGAGTACAAATGGCGTTTATGTCAATAATTCGAACTGTTTAATGATGGAGGCATATTA
A

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

83.871

100

0.839