Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   I6L26_RS16950 Genome accession   NZ_CP077303
Coordinates   3582148..3582630 (-) Length   160 a.a.
NCBI ID   WP_005804550.1    Uniprot ID   A0A009N252
Organism   Acinetobacter pittii strain FDAARGOS 1396     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3577148..3587630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L26_RS16915 (I6L26_16915) - 3577232..3578263 (+) 1032 WP_005804553.1 lipase secretion chaperone -
  I6L26_RS16920 (I6L26_16920) lip 3578379..3579320 (+) 942 WP_078210319.1 lipase family alpha/beta hydrolase -
  I6L26_RS16925 (I6L26_16925) rplS 3579373..3579741 (-) 369 WP_002116654.1 50S ribosomal protein L19 -
  I6L26_RS16930 (I6L26_16930) trmD 3579961..3580716 (-) 756 WP_002116964.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  I6L26_RS16935 (I6L26_16935) rimM 3580759..3581307 (-) 549 WP_002116736.1 ribosome maturation factor RimM -
  I6L26_RS16940 (I6L26_16940) rpsP 3581327..3581578 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  I6L26_RS16945 (I6L26_16945) pilE 3581726..3582151 (-) 426 WP_025464177.1 type IV pilin protein Machinery gene
  I6L26_RS16950 (I6L26_16950) pilY2 3582148..3582630 (-) 483 WP_005804550.1 type IV pilin protein Machinery gene
  I6L26_RS16955 (I6L26_16955) pilY1 3582641..3586495 (-) 3855 WP_005804549.1 PilC/PilY family type IV pilus protein Machinery gene
  I6L26_RS16960 (I6L26_16960) pilX 3586507..3587316 (-) 810 WP_005067126.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17550.79 Da        Isoelectric Point: 8.4721

>NTDB_id=580711 I6L26_RS16950 WP_005804550.1 3582148..3582630(-) (pilY2) [Acinetobacter pittii strain FDAARGOS 1396]
MNKYYIQRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKGEILKLAEQLERHKSKNFTYRGFTTTSVTLP
RGGYTIEISDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGTVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=580711 I6L26_RS16950 WP_005804550.1 3582148..3582630(-) (pilY2) [Acinetobacter pittii strain FDAARGOS 1396]
ATGAATAAATACTATATCCAACGGTTTAATCAGGGTGTTACCTTGATTGAGCTCATGGTTGTCATCGTGATTGTCGCTAT
TTTTGCTTCGATTGCTATCCCTTCATATCAAAGTTATAGCCGCAGAGCGACTGCCTCTGCTGCTAAAGGTGAAATTCTAA
AATTGGCAGAACAGTTGGAACGGCATAAATCCAAGAACTTTACCTATAGAGGATTTACTACGACATCTGTAACTTTGCCA
CGGGGTGGTTATACGATTGAAATTAGTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAGAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAATTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGCCAAAGTT
TAACAGCTACAGCTGTTGATAATGACTGTGGTGGAACAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009N252

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

94.375

100

0.944
  comE Acinetobacter baylyi ADP1

40.678

100

0.45