Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6L46_RS19215 Genome accession   NZ_CP077301
Coordinates   4216612..4217199 (-) Length   195 a.a.
NCBI ID   WP_005340181.1    Uniprot ID   A0A165S798
Organism   Aeromonas sp. FDAARGOS 1416     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4211612..4222199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L46_RS19195 (I6L46_19195) cspA 4212919..4213131 (-) 213 WP_005316548.1 RNA chaperone/antiterminator CspA -
  I6L46_RS19200 (I6L46_19200) yjbD 4213726..4214010 (-) 285 WP_005340165.1 DUF3811 domain-containing protein -
  I6L46_RS19205 (I6L46_19205) - 4214157..4215059 (-) 903 WP_043822581.1 cation diffusion facilitator family transporter -
  I6L46_RS20800 - 4215524..4215646 (+) 123 WP_005306071.1 hypothetical protein -
  I6L46_RS19210 (I6L46_19210) - 4215719..4216462 (-) 744 WP_064341833.1 ABC transporter substrate-binding protein -
  I6L46_RS19215 (I6L46_19215) ssb 4216612..4217199 (-) 588 WP_005340181.1 single-stranded DNA-binding protein Machinery gene
  I6L46_RS19220 (I6L46_19220) uvrA 4217570..4220398 (+) 2829 WP_216976768.1 excinuclease ABC subunit UvrA -
  I6L46_RS20830 (I6L46_19225) - 4220520..4222192 (+) 1673 Protein_3708 diguanylate cyclase -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21583.11 Da        Isoelectric Point: 5.9301

>NTDB_id=580666 I6L46_RS19215 WP_005340181.1 4216612..4217199(-) (ssb) [Aeromonas sp. FDAARGOS 1416]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGQGMGQNMGGQSQGNWGQPQQSMPAQQPMNQQRPAPAPQQ
NMQPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=580666 I6L46_RS19215 WP_005340181.1 4216612..4217199(-) (ssb) [Aeromonas sp. FDAARGOS 1416]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACTCTGGCTACCTCCGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AATGGCACCGCGTCGTCTTCATGGGCAAGTTGGCCGAAGTGGCTGGCGAGTACCTGAAGAAGGGCTCCCAGGTCTATGTG
GAAGGCAAACTGCAAACCCGCAAATGGCAGGATCAGAGCGGCCAGGAGCGCTACACCACTGAAGTGCTGGTCGACAGCTT
CACTGGCGTGATGCAGATGCTGGGTGGTCGTCCGCAAGGCGGTCAGGGTATGGGCCAGAACATGGGTGGCCAATCCCAGG
GTAACTGGGGTCAGCCGCAGCAGAGCATGCCTGCCCAGCAGCCGATGAACCAGCAGCGCCCGGCACCGGCTCCGCAGCAG
AACATGCAGCCACAAGGCGGTTATGGCCGTCCTGCCCAGCAGCCGCAATCTGCGCCGCCGGTATATAACGAGCCGCCGAT
GGATTTCGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A165S798

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.347

100

0.708
  ssb Glaesserella parasuis strain SC1401

53.886

98.974

0.533
  ssb Neisseria meningitidis MC58

46.597

97.949

0.456
  ssb Neisseria gonorrhoeae MS11

46.842

97.436

0.456