Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   SPN034156_RS05975 Genome accession   NC_021006
Coordinates   1107373..1108131 (+) Length   252 a.a.
NCBI ID   WP_000410383.1    Uniprot ID   -
Organism   Streptococcus pneumoniae SPN034156     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1102373..1113131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPN034156_RS05945 (SPN034156_10570) comE 1102969..1103721 (-) 753 WP_000866065.1 competence system response regulator transcription factor ComE Regulator
  SPN034156_RS05950 (SPN034156_10580) comD/comD1 1103718..1105043 (-) 1326 WP_015511364.1 competence system sensor histidine kinase ComD Regulator
  SPN034156_RS05955 (SPN034156_10590) comC/comC1 1105064..1105189 (-) 126 WP_000799689.1 competence-stimulating peptide ComC Regulator
  SPN034156_RS05965 (SPN034156_10600) rlmH 1105472..1105951 (-) 480 WP_000695929.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  SPN034156_RS05970 (SPN034156_10610) htrA 1106134..1107315 (+) 1182 WP_000681597.1 trypsin-like peptidase domain-containing protein Regulator
  SPN034156_RS05975 (SPN034156_10620) spo0J 1107373..1108131 (+) 759 WP_000410383.1 ParB/RepB/Spo0J family partition protein Regulator
  SPN034156_RS05980 (SPN034156_10630) dnaA 1108344..1109705 (+) 1362 WP_000660615.1 chromosomal replication initiator protein DnaA -
  SPN034156_RS05985 (SPN034156_10640) dnaN 1109864..1111000 (+) 1137 WP_000581155.1 DNA polymerase III subunit beta -
  SPN034156_RS05990 (SPN034156_10650) - 1111065..1111259 (+) 195 WP_000285194.1 DUF951 family protein -
  SPN034156_RS05995 (SPN034156_10660) ychF 1111343..1112458 (+) 1116 WP_001218707.1 redox-regulated ATPase YchF -
  SPN034156_RS06000 (SPN034156_10670) pth 1112529..1113098 (+) 570 WP_000163932.1 aminoacyl-tRNA hydrolase -

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 29183.53 Da        Isoelectric Point: 9.0667

>NTDB_id=58044 SPN034156_RS05975 WP_000410383.1 1107373..1108131(+) (spo0J) [Streptococcus pneumoniae SPN034156]
MEKFEMISITDIQKNPYQPRKEFDREKLDELAQSIKENGVIQPIIVRQSPVIGYEILAGERRYRASLLAGLRSIPAVVKQ
ISDQEMMVQSIIENLQRENLNPIEEARAYESLVEKGFTHAEIADKMGKSRPYISNSIRLLSLPEQILSEVENGKLSQAHA
RSLVGLNKEQQDYFFQRIIEEDISVRKLETLLTEKKQKKQQKTNHFIQNEEKQLRKLLGLDVEIKLSKKDSGKIIISFSN
QEEYSRIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=58044 SPN034156_RS05975 WP_000410383.1 1107373..1108131(+) (spo0J) [Streptococcus pneumoniae SPN034156]
ATGGAAAAATTTGAAATGATTTCTATCACAGATATACAAAAAAATCCCTATCAACCCCGAAAAGAATTTGATAGAGAAAA
GCTAGATGAACTAGCACAGTCTATCAAAGAAAATGGGGTCATTCAACCGATTATTGTTCGTCAATCTCCTGTTATTGGTT
ATGAAATCCTTGCAGGAGAGAGACGCTATCGGGCTTCACTTTTAGCTGGTCTACGGTCTATCCCAGCTGTTGTTAAACAG
ATTTCAGACCAAGAGATGATGGTCCAGTCCATTATTGAAAATTTACAGAGAGAAAATTTAAACCCAATAGAAGAAGCACG
CGCCTATGAATCTCTCGTAGAGAAAGGATTCACCCATGCTGAAATTGCAGATAAGATGGGCAAGTCTCGTCCATATATCA
GCAACTCCATTCGTTTACTTTCCTTGCCAGAACAGATTCTCTCAGAAGTAGAAAATGGCAAACTATCACAAGCCCATGCG
CGTTCCCTAGTTGGGTTAAATAAGGAACAACAAGACTATTTCTTTCAACGGATTATAGAAGAAGATATTTCTGTAAGGAA
GTTAGAAACTCTTCTGACAGAGAAAAAACAAAAGAAACAGCAAAAAACTAATCATTTCATACAAAATGAAGAAAAACAGT
TAAGAAAACTACTCGGATTAGATGTAGAAATTAAACTATCTAAAAAAGACAGTGGAAAAATCATTATTTCTTTTTCAAAT
CAAGAAGAATATAGTAGAATTATCAACAGCCTGAAATAA

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(144-192)

ParB/Sulfiredoxin domain (ParB_N)

(6-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

50.198

100

0.504

Multiple sequence alignment