Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6L79_RS02885 Genome accession   NZ_CP077260
Coordinates   658649..659170 (+) Length   173 a.a.
NCBI ID   WP_004260894.1    Uniprot ID   -
Organism   Providencia rettgeri strain FDAARGOS 1449     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 653649..664170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L79_RS02875 (I6L79_02875) - 653697..654893 (+) 1197 WP_036958319.1 amino acid aminotransferase -
  I6L79_RS02880 (I6L79_02880) uvrA 654974..657808 (-) 2835 WP_004260897.1 excinuclease ABC subunit UvrA -
  I6L79_RS02885 (I6L79_02885) ssb 658649..659170 (+) 522 WP_004260894.1 single-stranded DNA-binding protein Machinery gene
  I6L79_RS02890 (I6L79_02890) - 659455..659862 (-) 408 WP_004260890.1 helix-turn-helix domain-containing protein -
  I6L79_RS02895 (I6L79_02895) - 660105..661277 (-) 1173 WP_004260887.1 MFS transporter -
  I6L79_RS02900 (I6L79_02900) ivbL 661609..661698 (+) 90 WP_099975407.1 ilvB operon leader peptide IvbL -
  I6L79_RS02905 (I6L79_02905) ilvB 661802..663499 (+) 1698 WP_036958316.1 acetolactate synthase large subunit -
  I6L79_RS02910 (I6L79_02910) ilvN 663502..663786 (+) 285 WP_004260877.1 acetolactate synthase small subunit -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18535.56 Da        Isoelectric Point: 4.9468

>NTDB_id=580413 I6L79_RS02885 WP_004260894.1 658649..659170(+) (ssb) [Providencia rettgeri strain FDAARGOS 1449]
MASRGVNKVILIGNLGQDPEIRYMPNGGAVANLTLATSESWRDKQTGEMREKTEWHRVVIFGKLAEVAGEYLKKGSQVYI
EGSLQTRKWQDQSGQDRYTTEVVVNIGGSMQMLGGRGGDAASQGQGGQGGWGQPQQPQAAQQFSGGGAPAARSPAPAPQT
NEPPMDFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=580413 I6L79_RS02885 WP_004260894.1 658649..659170(+) (ssb) [Providencia rettgeri strain FDAARGOS 1449]
ATGGCCAGCAGAGGCGTAAATAAAGTAATTCTTATCGGTAACCTAGGACAAGATCCAGAAATCCGTTATATGCCTAACGG
CGGAGCTGTGGCAAACCTGACTCTGGCAACTTCTGAAAGTTGGCGTGACAAGCAAACCGGTGAGATGCGTGAAAAAACCG
AATGGCACCGCGTGGTTATTTTCGGCAAATTAGCGGAAGTGGCAGGTGAATACCTGAAAAAAGGTTCACAAGTCTATATC
GAAGGTTCTCTGCAAACACGTAAATGGCAAGACCAAAGTGGTCAAGACCGTTACACGACAGAAGTTGTTGTGAATATCGG
CGGCTCAATGCAAATGCTAGGTGGCCGTGGCGGTGATGCAGCATCACAAGGTCAAGGCGGCCAAGGCGGTTGGGGCCAAC
CTCAACAGCCACAAGCAGCACAACAATTTAGTGGTGGCGGAGCTCCAGCCGCACGCTCACCAGCACCTGCTCCACAAACT
AATGAACCACCAATGGATTTCGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.667

100

0.746
  ssb Glaesserella parasuis strain SC1401

57.143

100

0.624
  ssb Neisseria meningitidis MC58

48.045

100

0.497
  ssb Neisseria gonorrhoeae MS11

46.927

100

0.486