Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   I6L86_RS04870 Genome accession   NZ_CP077259
Coordinates   1038376..1039872 (+) Length   498 a.a.
NCBI ID   WP_000759915.1    Uniprot ID   -
Organism   Streptococcus mitis strain FDAARGOS 1456     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1033376..1044872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L86_RS04850 (I6L86_04850) endA 1033468..1034292 (+) 825 WP_023947085.1 DNA-entry nuclease EndA Machinery gene
  I6L86_RS04855 (I6L86_04855) - 1034559..1035890 (+) 1332 WP_000390033.1 hemolysin family protein -
  I6L86_RS04865 (I6L86_04865) amiA3 1036321..1038309 (+) 1989 WP_000749582.1 peptide ABC transporter substrate-binding protein Regulator
  I6L86_RS04870 (I6L86_04870) amiC 1038376..1039872 (+) 1497 WP_000759915.1 ABC transporter permease Regulator
  I6L86_RS04875 (I6L86_04875) amiD 1039872..1040798 (+) 927 WP_000103691.1 oligopeptide ABC transporter permease OppC Regulator
  I6L86_RS04880 (I6L86_04880) amiE 1040807..1041874 (+) 1068 WP_000159550.1 ABC transporter ATP-binding protein Regulator
  I6L86_RS04885 (I6L86_04885) amiF 1041885..1042811 (+) 927 WP_001291284.1 ATP-binding cassette domain-containing protein Regulator
  I6L86_RS04890 (I6L86_04890) - 1043215..1044093 (-) 879 WP_001049302.1 LysR family transcriptional regulator -
  I6L86_RS04895 (I6L86_04895) - 1044221..1044571 (-) 351 WP_000208711.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55788.31 Da        Isoelectric Point: 9.3386

>NTDB_id=580383 I6L86_RS04870 WP_000759915.1 1038376..1039872(+) (amiC) [Streptococcus mitis strain FDAARGOS 1456]
MKKYIFMRVLRSLVSIFLVTTLTYTIIYTMVPRKLIFKQDTNYNKIATTADKRDNYENTVYERMGYIEYYDTKELQEKAS
QMDASVTVEANDTNKAIYEKYIKQIGHGWTLGEFTESGQFYATREIPIFERVFHFYANLIDIDHTNKIQDPENPDLKRYL
RFENDPAIGWSLVGSGTKHKYLLYFNSQFPFVHQNFVNINLGDSYPTYANSPVLQVITQGQGQTKTSQVQFPTGKKTSSV
NIYSRTYKSPSQADSREVANYGKDDPYTATESNYQYPSMIASSAVVGLIGLVISYAIAVPLGSAMARFKNTWIDSFSTGF
LTFLMALPTIALVYIVRLIGSSIGLPDSFPILGAGDWRSYVLPAVILGLLGAPGTAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSGIPGAVIGVIGGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCISIFSLLLGD
IWMTIIDPRIKLTEKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=580383 I6L86_RS04870 WP_000759915.1 1038376..1039872(+) (amiC) [Streptococcus mitis strain FDAARGOS 1456]
ATGAAAAAATATATTTTTATGCGTGTTTTGCGGTCCTTGGTTTCTATCTTCTTAGTAACAACCTTGACTTACACGATTAT
CTATACAATGGTTCCTCGAAAATTGATTTTCAAACAGGATACCAACTATAACAAGATTGCTACAACTGCTGATAAACGTG
ATAACTATGAGAATACCGTTTATGAGCGTATGGGCTATATCGAGTACTACGATACCAAAGAGTTGCAAGAAAAAGCTAGC
CAGATGGATGCTTCTGTAACAGTTGAAGCCAATGATACCAACAAGGCTATCTATGAAAAATACATCAAACAAATCGGTCA
TGGTTGGACCCTGGGAGAATTTACTGAAAGTGGCCAATTCTACGCTACGCGTGAAATCCCGATTTTTGAACGTGTTTTTC
ACTTCTATGCTAACTTGATTGACATTGATCATACAAATAAAATTCAAGACCCTGAAAATCCAGACTTGAAACGTTACCTT
CGTTTTGAAAACGATCCAGCGATCGGATGGTCCTTGGTCGGTTCAGGAACAAAACACAAATATCTCTTGTACTTCAACAG
TCAGTTCCCGTTTGTGCATCAAAACTTTGTGAACATTAATTTAGGTGACTCTTATCCAACCTATGCTAATAGCCCTGTTT
TACAGGTCATTACTCAAGGACAAGGGCAAACAAAAACATCTCAAGTTCAGTTCCCAACAGGTAAGAAAACTTCTTCTGTA
AATATTTACTCAAGAACCTACAAATCGCCTAGTCAGGCTGATTCTCGTGAAGTAGCCAACTATGGGAAAGATGACCCATA
TACTGCAACTGAAAGCAACTACCAATATCCTTCTATGATTGCTAGCTCTGCAGTCGTTGGATTGATTGGTTTGGTGATTT
CTTATGCGATTGCCGTGCCACTTGGTTCAGCTATGGCTCGCTTCAAGAATACTTGGATTGATAGCTTCTCAACAGGGTTT
TTGACCTTCTTGATGGCCCTTCCAACCATTGCCTTGGTTTACATTGTTCGTTTGATTGGATCATCAATTGGTCTTCCAGA
TTCATTCCCTATTTTGGGTGCTGGAGATTGGCGTTCGTATGTTTTACCAGCAGTGATTCTTGGTTTGTTGGGTGCTCCTG
GTACAGCTATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAGGACTTTGTTCGTTTTGCTCGTGCCAAAGGTTTG
TCTGAAAAAGAAATTTCAAACAAACACATCTTTAAAAATGCCATGGTTCCGCTGGTTTCAGGAATTCCTGGTGCCGTTAT
CGGGGTTATTGGTGGTGCAACCCTTACTGAAACAGTCTTCGCCTTCCCAGGTATGGGTAAAATGTTGATTGACTCTGTAA
AAGCATCTAATAACTCTATGGTCGTTGGTCTTGTCTTCATCTTTACATGTATTTCTATCTTCTCACTTCTTTTGGGAGAT
ATTTGGATGACTATTATTGACCCACGTATTAAATTGACTGAGAAAGGAGGCAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

76.707

100

0.767
  amiC Streptococcus thermophilus LMG 18311

76.506

100

0.765
  amiC Streptococcus thermophilus LMD-9

76.104

100

0.761