Detailed information NTG0058033

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: STO1_RS01225
• Genome accession: NZ_AP018338
• Coordinates: 227290..228288 (+)
• Length: 332 a.a.
• NCBI ID: WP_080978824.1
• Uniprot ID: -
• Organism: Streptococcus oralis subsp. tigurinus strain osk_001
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 222290..233288

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
STO1_RS01195 (STO1_002330)	-	222974..223840 (+)	867	WP_033585855.1	ABC transporter ATP-binding protein	-
STO1_RS01200 (STO1_002340)	-	223840..224682 (+)	843	WP_033585856.1	ABC transporter permease	-
STO1_RS01205 (STO1_002350)	-	224701..225156 (+)	456	WP_009729708.1	LytTR family DNA-binding domain-containing protein	-
STO1_RS01210 (STO1_002360)	-	225166..225585 (+)	420	WP_084939383.1	DUF3021 domain-containing protein	-
STO1_RS01215 (STO1_002370)	-	225680..226375 (+)	696	WP_096421615.1	GNAT family N-acetyltransferase	-
STO1_RS01220 (STO1_002380)	-	226387..226803 (+)	417	WP_096421617.1	GNAT family N-acetyltransferase	-
STO1_RS01225 (STO1_002390)	ruvB	227290..228288 (+)	999	WP_080978824.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
STO1_RS01230 (STO1_002400)	-	228269..228853 (+)	585	WP_096421619.1	nucleotidyltransferase family protein	-
STO1_RS01235 (STO1_002410)	-	229061..229819 (+)	759	WP_096421621.1	isoprenyl transferase	-
STO1_RS01240 (STO1_002420)	-	229828..230631 (+)	804	WP_000159111.1	phosphatidate cytidylyltransferase	-
STO1_RS01245 (STO1_002430)	eeP	230647..231903 (+)	1257	WP_096421623.1	RIP metalloprotease RseP	Regulator

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37215.63 Da
• Isoelectric Point: 4.4666

>NTDB_id=58033 STO1_RS01225 WP_080978824.1 227290..228288(+) (ruvB) [Streptococcus oralis subsp. tigurinus strain osk_001]
MSRILDNEIMGDEELVERTLRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAGEGSRSVHLDLPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEMEITHEAAAELALRSRGTPRIANRLLKRVRDFAQIMGDGLID
DVITDKALTMLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATAK
AYEHLGYEYSEK

Nucleotide

• Length: 999 bp

>NTDB_id=58033 STO1_RS01225 WP_080978824.1 227290..228288(+) (ruvB) [Streptococcus oralis subsp. tigurinus strain osk_001]
ATGAGTAGAATTTTAGATAATGAAATCATGGGGGATGAGGAGTTGGTAGAACGTACCCTCCGTCCCCAGTATTTACGTGA
ATATATTGGGCAGGACAAGGTCAAGGATCAGCTTCAAATCTTTATTGAGGCAGCAAAAATGCGTGATGAGGCGCTGGACC
ATGTTCTTTTATTTGGTCCTCCAGGTCTCGGGAAAACAACCATGGCCTTTGTTATTGCCAATGAACTGGGAGTCAATCTC
AAGCAAACGTCTGGTCCTGTCATTGAAAAAGCGGGTGATCTGGTAGCGATTTTGAATGATTTGGAGCCTGGAGACGTTCT
CTTTATTGACGAGATTCATCGCTTACCCATGTCGGTGGAAGAGGTGCTCTATAGTGCCATGGAGGACTTCTACATTGATA
TCATGATTGGGGCTGGTGAAGGCAGTCGCAGTGTTCATTTGGATTTGCCGCCTTTTACCTTGATTGGTGCGACGACACGT
GCGGGGATGCTTTCTAATCCTCTACGAGCACGTTTTGGGATTACGGGTCATATGGAATACTATGCCCACGCTGACTTGAC
GGAAATTGTTGAGCGGACAGCAGATATTTTTGAGATGGAAATCACTCATGAAGCTGCAGCTGAGTTGGCCTTACGCAGTC
GTGGAACTCCTCGTATTGCCAATCGTCTCCTCAAGCGCGTGCGCGACTTTGCTCAGATTATGGGAGATGGCCTAATTGAT
GATGTGATTACGGATAAGGCCTTGACCATGCTGGATGTAGACCATGAAGGCTTAGACTATGTGGACCAAAAAATCCTCCG
TACCATGATTGAGATGTACGGTGGCGGTCCTGTCGGGCTAGGAACCCTTTCGGTTAATATTGCCGAGGAGCGCGAGACGG
TAGAAGATATGTACGAACCCTACCTCATCCAGAAAGGTTTCATCATGCGAACTCGTTCTGGACGGGTGGCGACAGCCAAG
GCTTATGAACATTTGGGGTATGAATACAGTGAAAAATGA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	98.193	100	0.982
ruvB	Streptococcus pneumoniae R6	97.892	100	0.979
ruvB	Streptococcus pneumoniae D39	97.892	100	0.979
ruvB	Bacillus subtilis subsp. subtilis str. 168	61.043	98.193	0.599
ruvB	Helicobacter pylori 26695	51.393	97.289	0.5
ruvB	Synechocystis sp. PCC 6803	48.193	100	0.482