Detailed information    

insolico Bioinformatically predicted

Overview


Name   cclA/cilC   Type   Machinery gene
Locus tag   I6L85_RS07430 Genome accession   NZ_CP077248
Coordinates   1497630..1498292 (+) Length   220 a.a.
NCBI ID   WP_111723419.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS 1455     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1492630..1503292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L85_RS07400 (I6L85_07400) - 1492944..1493222 (-) 279 WP_048777941.1 DUF3165 family protein -
  I6L85_RS07405 (I6L85_07405) typA 1493246..1495093 (-) 1848 WP_012000144.1 translational GTPase TypA -
  I6L85_RS07410 (I6L85_07410) - 1495275..1496000 (+) 726 WP_111723421.1 16S rRNA pseudouridine(516) synthase -
  I6L85_RS07415 (I6L85_07415) - 1496167..1496544 (-) 378 WP_020992684.1 rhodanese-like domain-containing protein -
  I6L85_RS07420 (I6L85_07420) - 1496541..1496801 (-) 261 WP_071788370.1 YqgQ family protein -
  I6L85_RS07425 (I6L85_07425) - 1496946..1497461 (-) 516 WP_111723420.1 DNA starvation/stationary phase protection protein -
  I6L85_RS07430 (I6L85_07430) cclA/cilC 1497630..1498292 (+) 663 WP_111723419.1 A24 family peptidase Machinery gene
  I6L85_RS07435 (I6L85_07435) trpA 1498261..1499040 (-) 780 WP_111723418.1 tryptophan synthase subunit alpha -
  I6L85_RS07440 (I6L85_07440) trpB 1499033..1500256 (-) 1224 WP_111723417.1 tryptophan synthase subunit beta -
  I6L85_RS07445 (I6L85_07445) - 1500246..1500833 (-) 588 WP_111723416.1 phosphoribosylanthranilate isomerase -
  I6L85_RS07450 (I6L85_07450) trpC 1500820..1501587 (-) 768 WP_111723415.1 indole-3-glycerol phosphate synthase TrpC -
  I6L85_RS07455 (I6L85_07455) trpD 1501584..1502588 (-) 1005 WP_111723414.1 anthranilate phosphoribosyltransferase -
  I6L85_RS07460 (I6L85_07460) - 1502599..1503162 (-) 564 WP_111723413.1 aminodeoxychorismate/anthranilate synthase component II -

Sequence


Protein


Download         Length: 220 a.a.        Molecular weight: 24877.11 Da        Isoelectric Point: 8.8759

>NTDB_id=580284 I6L85_RS07430 WP_111723419.1 1497630..1498292(+) (cclA/cilC) [Streptococcus gordonii strain FDAARGOS 1455]
MIHLYFFILGTVFASFLGLVIDRFPEQSIIAPASHCNACGKRLAPRDLIPIISQVWNHLRCRFCGDKIPLRYLFFEFVLG
SLFLATSLGILSISQLLVVTMGLTLAIYDQREQQYPFMVWLIFQLFLLMTSGINLLTLFFLALGLLAFFYNLRIGAGDFL
FLASCSAIFSLTEILILIQIASFSGLACFCFKKKKDRLAFVPCLLFGAVVLISYKLLLLR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=580284 I6L85_RS07430 WP_111723419.1 1497630..1498292(+) (cclA/cilC) [Streptococcus gordonii strain FDAARGOS 1455]
ATGATTCATCTATACTTTTTTATCCTTGGCACTGTCTTTGCCTCATTCCTAGGCTTGGTCATTGACCGCTTCCCAGAGCA
GTCTATCATCGCTCCTGCTAGCCATTGCAATGCCTGTGGGAAAAGACTGGCACCTCGTGATTTGATTCCTATTATTTCCC
AAGTCTGGAACCATCTTCGTTGCCGTTTCTGTGGAGATAAGATTCCCTTACGCTATTTATTTTTTGAATTTGTTTTAGGC
AGTCTTTTTCTGGCAACCTCCCTGGGCATTCTTTCCATTAGTCAATTATTGGTAGTTACCATGGGCTTAACCTTAGCTAT
CTACGATCAAAGAGAACAACAGTATCCCTTTATGGTCTGGTTAATTTTTCAGCTCTTCTTGCTAATGACCTCAGGCATCA
ATCTTCTCACGCTTTTCTTTTTAGCCTTAGGACTTCTAGCCTTCTTTTATAATCTTCGTATTGGTGCTGGTGACTTTCTA
TTTCTGGCGTCCTGCTCAGCTATTTTCAGTTTGACGGAAATTCTCATTCTTATCCAAATCGCTAGCTTCTCTGGCCTCGC
CTGCTTCTGCTTTAAAAAGAAAAAAGACAGGCTGGCATTTGTACCCTGTCTTTTGTTTGGTGCTGTGGTTCTTATTTCTT
ATAAGCTGCTGCTTCTTCGATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

59.361

99.545

0.591

  cclA/cilC Streptococcus mitis NCTC 12261

59.361

99.545

0.591

  cclA/cilC Streptococcus pneumoniae Rx1

57.991

99.545

0.577

  cclA/cilC Streptococcus pneumoniae D39

57.991

99.545

0.577

  cclA/cilC Streptococcus pneumoniae R6

57.991

99.545

0.577

  cclA/cilC Streptococcus pneumoniae TIGR4

57.078

99.545

0.568