Detailed information    

insolico Bioinformatically predicted

Overview

Name   micB   Type   Regulator
Locus tag   I6L85_RS06865 Genome accession   NZ_CP077248
Coordinates   1386094..1387455 (-) Length   453 a.a.
NCBI ID   WP_111723481.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS 1455     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1381094..1392455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L85_RS06850 (I6L85_06850) rnc 1383966..1384664 (-) 699 WP_061601751.1 ribonuclease III -
  I6L85_RS06855 (I6L85_06855) - 1384907..1385263 (-) 357 WP_008809001.1 YbaN family protein -
  I6L85_RS06860 (I6L85_06860) vicX 1385298..1386101 (-) 804 WP_045634630.1 MBL fold metallo-hydrolase Regulator
  I6L85_RS06865 (I6L85_06865) micB 1386094..1387455 (-) 1362 WP_111723481.1 cell wall metabolism sensor histidine kinase VicK Regulator
  I6L85_RS06870 (I6L85_06870) micA 1387448..1388149 (-) 702 WP_008809004.1 response regulator YycF Regulator
  I6L85_RS06875 (I6L85_06875) - 1388549..1388926 (-) 378 WP_002899930.1 carboxymuconolactone decarboxylase family protein -
  I6L85_RS06880 (I6L85_06880) - 1389004..1389366 (+) 363 WP_111723480.1 MerR family transcriptional regulator -
  I6L85_RS06885 (I6L85_06885) thrS 1389421..1391364 (-) 1944 WP_111723479.1 threonine--tRNA ligase -
  I6L85_RS10595 - 1391456..1391827 (-) 372 WP_111724283.1 hypothetical protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 51726.75 Da        Isoelectric Point: 4.3793

>NTDB_id=580278 I6L85_RS06865 WP_111723481.1 1386094..1387455(-) (micB) [Streptococcus gordonii strain FDAARGOS 1455]
MIENIRQFVFSVDFVFVLIVLGFILVVALLFLENRRDNRQLRLLNQKIKDLIAGDYSEVLDMQGSPEITDMTNSINDLSE
VTRLTQENLEQETKRLTSILSYMTDGVLATNRRGQIIMINDMASKQLGVDPEEVQNTSILDLLDIADEYDLRDLITKMPE
LTIDSQDENGEYLSLRVRFALVRRESGFISGLVAVLHDTTEQEKEERERRLFVSNVSHELRTPLTSVKSYLEALDEGALS
EPVAPEFVKVSLTETNRMMRMVSDLLSLSRIDNDSSHLDVELTNFTAFITFILNRFDKIKSQDETKKYEIVRDYPITPIW
VEIDTDKMTQVIDNIMNNAIKYSPDGGKITVGMKTTEDQLIISISDEGLGIPKKDLPKIFDRFYRVDKARSRAQGGTGLG
LAIAKEIIKQHHGFIWAKSEYEVGSTFTIVLPYDKDAVLDDDWENEEVESKDD

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=580278 I6L85_RS06865 WP_111723481.1 1386094..1387455(-) (micB) [Streptococcus gordonii strain FDAARGOS 1455]
ATGATTGAAAATATTAGACAATTTGTGTTTTCTGTAGATTTTGTTTTTGTTTTAATTGTTTTAGGTTTTATTTTGGTTGT
TGCCCTGCTCTTTTTAGAGAATCGAAGGGATAATCGCCAACTTCGTCTGCTCAATCAAAAGATCAAAGATTTAATCGCAG
GAGACTATTCCGAGGTTCTGGATATGCAAGGCAGTCCAGAAATTACGGATATGACCAATAGTATAAATGATTTGTCTGAG
GTGACTAGATTAACACAAGAAAATCTGGAGCAAGAAACCAAACGTTTGACTAGTATTTTGTCCTACATGACGGATGGGGT
TTTGGCAACCAACCGTCGAGGCCAGATTATCATGATTAATGATATGGCTTCTAAGCAACTAGGTGTTGATCCAGAGGAAG
TCCAAAATACAAGTATTTTAGACTTGTTAGATATTGCGGATGAATATGATCTGCGAGATTTAATTACCAAGATGCCGGAG
TTGACGATTGATTCACAGGATGAAAATGGAGAATATTTAAGTCTGCGTGTTCGTTTTGCCTTGGTTCGTAGGGAATCTGG
TTTTATCTCTGGTTTGGTAGCTGTTCTGCACGATACGACGGAACAGGAAAAAGAGGAGCGGGAACGTCGACTTTTTGTAT
CAAATGTTAGTCATGAGCTCCGGACCCCTTTGACAAGTGTTAAGTCTTACCTAGAAGCTTTGGATGAGGGCGCTCTTTCT
GAGCCAGTTGCTCCCGAATTTGTTAAAGTTTCTCTTACTGAAACGAACCGAATGATGCGGATGGTTTCTGATTTGCTTAG
CTTATCAAGGATTGATAATGATAGTAGTCATTTGGATGTAGAATTAACTAATTTTACAGCTTTTATCACTTTTATTTTGA
ATCGTTTTGATAAGATTAAAAGTCAGGATGAAACCAAAAAATATGAGATTGTACGAGATTATCCAATCACACCTATTTGG
GTTGAAATTGATACTGATAAAATGACGCAGGTCATTGATAATATCATGAATAATGCTATCAAGTATTCTCCAGATGGTGG
AAAGATTACCGTAGGGATGAAAACGACGGAAGATCAGCTGATTATTTCAATTTCTGATGAAGGATTGGGAATTCCCAAAA
AAGACCTACCTAAGATCTTTGACCGTTTTTATCGAGTGGATAAGGCTCGAAGCCGTGCGCAAGGTGGAACAGGCTTAGGA
CTTGCGATTGCAAAAGAAATCATCAAGCAGCACCATGGTTTTATCTGGGCAAAGAGTGAGTATGAAGTCGGATCGACTTT
TACAATTGTCCTACCGTATGATAAGGATGCTGTTTTGGATGATGACTGGGAAAATGAAGAAGTAGAAAGTAAAGATGACT
AA

Domains

Predicted by InterproScan.

PAS fold (PAS)

(96-198)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(324-434)

His Kinase A (phospho-acceptor) domain (HisKA)

(209-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micB Streptococcus pneumoniae Cp1015

80.822

96.689

0.781
  vicK Streptococcus mutans UA159

70.316

90.728

0.638