Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   I6L85_RS06860 Genome accession   NZ_CP077248
Coordinates   1385298..1386101 (-) Length   267 a.a.
NCBI ID   WP_045634630.1    Uniprot ID   A0AB34SA49
Organism   Streptococcus gordonii strain FDAARGOS 1455     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1380298..1391101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L85_RS06845 (I6L85_06845) smc 1380442..1383975 (-) 3534 WP_111723482.1 chromosome segregation protein SMC -
  I6L85_RS06850 (I6L85_06850) rnc 1383966..1384664 (-) 699 WP_061601751.1 ribonuclease III -
  I6L85_RS06855 (I6L85_06855) - 1384907..1385263 (-) 357 WP_008809001.1 YbaN family protein -
  I6L85_RS06860 (I6L85_06860) vicX 1385298..1386101 (-) 804 WP_045634630.1 MBL fold metallo-hydrolase Regulator
  I6L85_RS06865 (I6L85_06865) micB 1386094..1387455 (-) 1362 WP_111723481.1 cell wall metabolism sensor histidine kinase VicK Regulator
  I6L85_RS06870 (I6L85_06870) micA 1387448..1388149 (-) 702 WP_008809004.1 response regulator YycF Regulator
  I6L85_RS06875 (I6L85_06875) - 1388549..1388926 (-) 378 WP_002899930.1 carboxymuconolactone decarboxylase family protein -
  I6L85_RS06880 (I6L85_06880) - 1389004..1389366 (+) 363 WP_111723480.1 MerR family transcriptional regulator -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29688.67 Da        Isoelectric Point: 6.1195

>NTDB_id=580277 I6L85_RS06860 WP_045634630.1 1385298..1386101(-) (vicX) [Streptococcus gordonii strain FDAARGOS 1455]
MTKEGFKYSILASGSSGNCFYLETAKKKILVDAGLSGKKITSLLSEINRKPEDLDAILVTHEHKDHIHGVGVLARKYNLD
IYANEDTWKAMDSALGKIDISQKHIFEMGKVMTFGDIDIESFGVSHDAAAPQFYRFMKDDKSFVMLTDTGYVSDRMAGVV
ENADGYLIESNHDVEILRSGAYPWSLKQRILSDKGHLSNEDGADTMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLAVNHDFQVLDTSPDTATPLTSI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=580277 I6L85_RS06860 WP_045634630.1 1385298..1386101(-) (vicX) [Streptococcus gordonii strain FDAARGOS 1455]
ATGACTAAGGAAGGTTTTAAGTATAGCATTTTAGCATCTGGATCCAGTGGTAATTGTTTTTATTTAGAAACAGCCAAAAA
GAAGATTTTGGTGGATGCGGGACTATCTGGTAAAAAAATCACTAGTCTCCTAAGTGAAATTAATCGTAAACCAGAAGATT
TAGATGCTATTTTAGTAACTCATGAACATAAGGATCACATTCATGGTGTTGGGGTCTTAGCCCGCAAGTATAATTTAGAT
ATCTATGCTAATGAAGATACTTGGAAAGCTATGGATAGTGCCTTAGGGAAAATTGATATCAGCCAAAAGCATATTTTTGA
AATGGGTAAGGTTATGACTTTTGGTGATATAGATATTGAAAGTTTTGGTGTTAGCCATGATGCGGCGGCACCACAATTTT
ATCGGTTTATGAAAGACGATAAAAGTTTTGTTATGCTGACGGATACGGGCTATGTGAGTGATCGTATGGCTGGAGTAGTT
GAAAATGCTGATGGTTACTTGATTGAGAGTAATCATGATGTAGAAATTTTGCGTAGTGGAGCTTACCCTTGGAGTCTTAA
GCAACGTATTTTATCCGATAAAGGCCACTTATCTAATGAAGATGGTGCTGATACGATGATTCGAACCTTGGGGAACCGTA
CCAAAAAGATTTATCTAGGTCACTTGAGTAAGGAGAATAATATCAAGGAGCTTGCTCATATGACTATGGTTAATCAGCTG
GCTCAAGCTGACTTGGCAGTCAATCATGACTTTCAAGTTTTGGATACTTCGCCAGATACAGCTACGCCTCTGACATCAAT
TTAA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

80.15

100

0.802