Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   I6L85_RS03065 Genome accession   NZ_CP077248
Coordinates   607109..608062 (+) Length   317 a.a.
NCBI ID   WP_111723973.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS 1455     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 602109..613062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L85_RS03045 (I6L85_03045) queA 602188..603216 (-) 1029 WP_111723975.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  I6L85_RS03050 (I6L85_03050) - 603524..604231 (+) 708 WP_061583073.1 glucosamine-6-phosphate deaminase -
  I6L85_RS03055 (I6L85_03055) - 604386..605753 (+) 1368 WP_231872509.1 DUF1958 domain-containing protein -
  I6L85_RS03060 (I6L85_03060) - 605851..607023 (+) 1173 WP_111723974.1 MFS transporter -
  I6L85_RS03065 (I6L85_03065) coiA 607109..608062 (+) 954 WP_111723973.1 competence protein CoiA Machinery gene
  I6L85_RS03070 (I6L85_03070) pepF 608218..610020 (+) 1803 WP_111723972.1 oligoendopeptidase F Regulator
  I6L85_RS03075 (I6L85_03075) - 610022..610708 (+) 687 WP_111723971.1 O-methyltransferase -
  I6L85_RS03080 (I6L85_03080) prsA 610911..611840 (+) 930 WP_096755052.1 peptidylprolyl isomerase PrsA -
  I6L85_RS03085 (I6L85_03085) - 612070..612555 (+) 486 WP_061602167.1 LURP-one-related family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 37885.43 Da        Isoelectric Point: 9.1210

>NTDB_id=580269 I6L85_RS03065 WP_111723973.1 607109..608062(+) (coiA) [Streptococcus gordonii strain FDAARGOS 1455]
MFSARDKDGKVLHLLKESSVSKGEYFCPGCGGPVRLKQGKIMQPHFAHIRLSDCHYSVENESREHLNLKAALFRWANQAT
RVDVEVFLPDLQQVADVLVDERLALEVQCSSLSQDRLWERSHRYRQAGYQVLWFLGKKLWLRQTLTPLQKQFLYFSQNMG
FHIWELDEERKVLRLKYLIHEDLHGQLQYKEKEFPFERGELLDILRLPFSKQEMSSFLVKSDPDICHYIRQQLYYRNPKW
MKKQASYYQKGKNLLTMSREEFYPQVRPVRSDQPLCQISQDLSAYYKNFQRYYQHSPDKKYQIVYPPAFYASLDQSC

Nucleotide


Download         Length: 954 bp        

>NTDB_id=580269 I6L85_RS03065 WP_111723973.1 607109..608062(+) (coiA) [Streptococcus gordonii strain FDAARGOS 1455]
ATGTTTTCAGCACGTGATAAGGATGGGAAGGTTCTTCATCTATTAAAGGAGTCATCCGTTTCAAAAGGAGAATATTTTTG
CCCAGGGTGTGGAGGGCCTGTCCGTTTGAAGCAGGGGAAAATCATGCAACCTCATTTCGCACATATTCGTTTATCAGACT
GTCATTATAGTGTTGAAAATGAAAGTAGAGAACATCTGAACCTTAAGGCTGCCCTTTTTCGCTGGGCTAATCAAGCGACA
AGAGTAGATGTCGAAGTGTTTTTGCCAGACTTGCAGCAAGTGGCGGATGTCTTAGTTGATGAGCGCCTTGCTTTAGAAGT
TCAGTGTAGCAGTCTTTCCCAAGATAGACTTTGGGAGCGAAGTCATAGATATCGCCAAGCTGGCTATCAAGTTCTTTGGT
TCCTGGGAAAGAAACTCTGGCTCAGGCAAACTCTGACACCCTTGCAGAAGCAATTCCTATATTTCAGTCAAAACATGGGT
TTTCATATCTGGGAATTGGACGAGGAAAGAAAGGTGCTAAGGCTGAAGTATTTGATTCATGAAGATCTTCATGGGCAACT
CCAGTATAAAGAAAAAGAATTTCCTTTTGAAAGAGGAGAATTGTTAGATATCTTACGATTGCCTTTTAGTAAGCAGGAAA
TGAGTAGTTTCTTAGTGAAGTCAGATCCTGATATTTGCCATTATATCCGACAGCAACTCTATTATCGAAATCCCAAGTGG
ATGAAAAAACAGGCCAGCTATTATCAAAAAGGAAAAAATCTTTTAACCATGTCTAGAGAAGAATTCTATCCTCAAGTGCG
CCCGGTTCGTTCAGACCAGCCCTTGTGTCAGATTTCCCAAGACCTATCTGCTTATTATAAAAACTTCCAGCGCTATTATC
AACATTCTCCAGATAAAAAGTACCAGATTGTCTACCCACCAGCCTTTTACGCAAGTTTAGATCAGTCTTGCTGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

57.419

97.792

0.562
  coiA Streptococcus pneumoniae TIGR4

54.839

97.792

0.536
  coiA Streptococcus pneumoniae Rx1

54.839

97.792

0.536
  coiA Streptococcus pneumoniae D39

54.839

97.792

0.536
  coiA Streptococcus pneumoniae R6

54.839

97.792

0.536
  coiA Lactococcus lactis subsp. cremoris KW2

41.284

100

0.426