Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   I6L85_RS02425 Genome accession   NZ_CP077248
Coordinates   467185..469143 (+) Length   652 a.a.
NCBI ID   WP_111724042.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS 1455     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 462185..474143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L85_RS02415 (I6L85_02415) pbp3 463476..464714 (-) 1239 WP_111724044.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  I6L85_RS02420 (I6L85_02420) amiA 465007..466968 (+) 1962 WP_111724043.1 peptide ABC transporter substrate-binding protein Regulator
  I6L85_RS02425 (I6L85_02425) amiA3 467185..469143 (+) 1959 WP_111724042.1 peptide ABC transporter substrate-binding protein Regulator
  I6L85_RS02430 (I6L85_02430) amiA 469393..471375 (+) 1983 WP_111724041.1 peptide ABC transporter substrate-binding protein Regulator
  I6L85_RS02435 (I6L85_02435) amiA 471652..473643 (+) 1992 WP_061582792.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72301.08 Da        Isoelectric Point: 5.0294

>NTDB_id=580257 I6L85_RS02425 WP_111724042.1 467185..469143(+) (amiA3) [Streptococcus gordonii strain FDAARGOS 1455]
MNKKKRFVGVGLAVLSSVILAACSSTASNTKVYSYVYSSDPDSLDYVVANRATTSDVTGNLIDGLLENDKYGNLIPSLAE
DWTVSKDGLTYTYKLRKDAKWYTSDGEEYAEVKAQDFVTGLKHAADGKSEALYLVQNSIKGLDAYIKGETKDFSTVGVKA
LDDYTVQYTLNKPESYWNSKTTSGILFPINADFLASQGNSFGSAKPSSILYNGPYILKSLTAKSSIEYKKNENYWDKENV
PIEDVKLSYYDGSDQESLVRNFSDGAYTLARVFPNSSNYASVKKKYADNITYSQQGGTSFFYVFNVNRQSYNHTSKKDDK
KKSDTKAAILNKDFRQAIGFAFDRKAYAAQTNGEDGASMILRNLAVPPTFVQIKDRNFGDVVKEKLASYGQEWSDVKLED
AQDGLYNAEKAKTEFAKAKEALQAQGVNFPIHLDLPVSQSDKAGIQQASSFKQSVESALGKDNVVVDLQQMSEDDFNNTG
YFANSAAQKDYDLSTSGWTPDYQDPSTYLDVFDPTNGGLLQAIGIEPGQNQDVVSALGLNDYKALNDDANKETSDTSVRY
EKYANSQAWLTDSGLTLPSISNGANPLVQKSVPFTRAYSWIGSKGTATNYKYMQLQEDVLTSKDYEKAFKTWMKEKESSN
EKAQKELEKHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=580257 I6L85_RS02425 WP_111724042.1 467185..469143(+) (amiA3) [Streptococcus gordonii strain FDAARGOS 1455]
ATGAATAAGAAAAAAAGATTTGTTGGAGTTGGACTTGCAGTTTTATCTTCTGTGATTTTAGCTGCTTGTAGTTCAACAGC
ATCTAATACAAAGGTGTATTCTTATGTATATAGTAGTGATCCAGATTCTTTGGACTATGTAGTTGCTAATCGTGCTACCA
CTTCAGATGTTACTGGAAATCTGATTGATGGTTTGCTTGAAAATGATAAGTATGGGAATTTGATTCCGTCTCTTGCTGAA
GATTGGACCGTATCTAAGGATGGTTTGACCTATACTTACAAGCTTCGAAAAGATGCTAAGTGGTATACCTCAGATGGCGA
AGAGTATGCTGAGGTAAAAGCTCAAGATTTTGTGACAGGATTGAAGCACGCAGCCGATGGCAAATCTGAAGCTCTTTACC
TTGTTCAAAATTCTATCAAAGGATTGGATGCCTATATCAAAGGGGAAACTAAAGACTTTTCTACTGTAGGTGTAAAAGCA
CTGGATGATTATACAGTGCAGTATACTTTGAATAAGCCAGAAAGTTACTGGAATTCGAAGACGACTAGTGGTATCTTATT
CCCGATAAATGCTGATTTCTTAGCTTCCCAAGGAAATAGTTTTGGCTCAGCTAAACCGTCTAGTATTTTGTACAATGGTC
CTTATATTTTGAAGTCTTTAACGGCAAAATCTTCTATTGAATATAAGAAAAACGAAAATTATTGGGATAAAGAAAATGTT
CCGATTGAAGATGTAAAACTGTCTTATTATGATGGATCTGATCAAGAATCCTTAGTTCGTAATTTTAGCGATGGTGCCTA
TACCCTGGCTCGTGTATTCCCAAATAGTTCGAACTATGCCTCTGTTAAAAAGAAATATGCGGATAATATTACCTATTCTC
AACAAGGTGGAACTTCATTTTTCTATGTCTTTAATGTAAATCGCCAGTCTTATAATCATACTTCTAAGAAAGATGACAAG
AAAAAATCAGATACCAAGGCTGCTATTTTAAACAAAGATTTCCGTCAGGCAATCGGTTTTGCTTTTGACCGAAAAGCTTA
CGCAGCTCAAACGAATGGCGAAGACGGAGCATCAATGATCTTGCGCAACCTTGCAGTGCCGCCGACATTTGTGCAGATTA
AGGATCGGAATTTTGGAGATGTCGTGAAAGAAAAACTAGCGAGCTACGGTCAAGAGTGGTCTGATGTCAAGTTAGAGGAT
GCCCAAGACGGTCTGTATAATGCTGAAAAAGCTAAAACAGAGTTTGCAAAAGCTAAAGAAGCGCTACAGGCTCAAGGTGT
GAATTTCCCAATTCATCTAGATTTGCCAGTGAGTCAGTCTGATAAGGCTGGAATTCAACAAGCTAGTTCCTTTAAGCAGT
CTGTTGAGTCAGCTCTAGGAAAAGATAATGTGGTAGTTGATCTTCAGCAAATGTCCGAAGACGACTTTAATAATACGGGT
TATTTTGCTAACTCAGCCGCTCAAAAAGATTATGATCTTTCAACCAGTGGTTGGACTCCTGATTATCAAGATCCTTCTAC
ATATCTAGATGTTTTTGATCCGACAAATGGTGGATTGCTACAAGCAATTGGAATTGAACCAGGTCAAAATCAAGATGTTG
TGTCAGCTCTAGGATTAAATGATTATAAAGCTCTGAATGATGATGCAAATAAGGAAACGTCTGATACGAGTGTGCGTTAT
GAAAAATATGCAAATTCTCAAGCATGGTTGACAGATAGTGGTTTGACCCTTCCAAGTATCTCAAACGGTGCTAATCCGCT
GGTTCAAAAATCAGTTCCATTTACTAGAGCCTACTCTTGGATTGGAAGCAAGGGGACTGCTACAAATTATAAATACATGC
AACTTCAAGAGGATGTTTTGACATCTAAGGATTATGAGAAGGCATTTAAAACCTGGATGAAAGAAAAAGAATCATCTAAT
GAAAAAGCTCAAAAAGAGTTAGAAAAACATGTAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

59.056

100

0.595
  amiA Streptococcus salivarius strain HSISS4

58.994

100

0.594
  amiA3 Streptococcus thermophilus LMG 18311

58.752

100

0.592