Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   I6L85_RS02420 Genome accession   NZ_CP077248
Coordinates   465007..466968 (+) Length   653 a.a.
NCBI ID   WP_111724043.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS 1455     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 460007..471968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L85_RS02405 (I6L85_02405) sufU 461202..461639 (+) 438 WP_111724045.1 Fe-S cluster assembly sulfur transfer protein SufU -
  I6L85_RS02410 (I6L85_02410) sufB 461657..463069 (+) 1413 WP_008809630.1 Fe-S cluster assembly protein SufB -
  I6L85_RS02415 (I6L85_02415) pbp3 463476..464714 (-) 1239 WP_111724044.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  I6L85_RS02420 (I6L85_02420) amiA 465007..466968 (+) 1962 WP_111724043.1 peptide ABC transporter substrate-binding protein Regulator
  I6L85_RS02425 (I6L85_02425) amiA3 467185..469143 (+) 1959 WP_111724042.1 peptide ABC transporter substrate-binding protein Regulator
  I6L85_RS02430 (I6L85_02430) amiA 469393..471375 (+) 1983 WP_111724041.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 653 a.a.        Molecular weight: 72686.89 Da        Isoelectric Point: 4.9834

>NTDB_id=580256 I6L85_RS02420 WP_111724043.1 465007..466968(+) (amiA) [Streptococcus gordonii strain FDAARGOS 1455]
MKPVKKLAVLGLTLASVFTLAACGNSNSGASKTYSYVYSTDPDTLDYTNTNRSTTSDVIANLVDGLLENDRYGNLVPSLA
EDWTVSKDGLTYTYKLRKGAKWYTSEGEEYAEVKAQDFVTGLKHAADSNSDALPIVQSSIKGLDAYVKGESKDFSTVGVK
AVDDYTVQYTLNKPESYWNSKTTMGILFPINEEFLKSSGKDFGTVKPSGILYNGPYFLKSFTSKSSIEYTKNDNYWDKNN
VKISDVKLTYFDGSDQEALVRNFKDGTYTQARLYPNSSSYASVQKQYKDNIVYSPQDASSFFYAFNYNRKAYNFTAKTTD
AQKTSTTAALLNKDFRQAINFAFNRTVYGAQQNGQEGATSSLRNSLVPPTFVQIGEKNFGDIVEKDLVSYGDEWKGVKLD
DAQDGLFNVEKAKAEFAKAKEALQAQGVEFPIHLDLPVEQTNNLLVQQANSFKQSVEEALGKDNVVIDVQQMSTENKNNV
TYFAETAAQKDYDINIAGWGPDFQDPSTYLNIFDPDKGDMLQNIGLEKGQNADLADKLGLNEFKKLNEEADSEKQDTTAR
YTKYAAAQAWLTDSSLVIPIQSNGGSPLVMKAVPFTKPYSLVGIKGDVYVFKYREVQNDIVTAKDYKAAEKKWKKEKEKS
NAKAQEELADHVK

Nucleotide


Download         Length: 1962 bp        

>NTDB_id=580256 I6L85_RS02420 WP_111724043.1 465007..466968(+) (amiA) [Streptococcus gordonii strain FDAARGOS 1455]
ATGAAACCAGTGAAAAAATTAGCTGTTTTAGGGCTAACGCTTGCTTCTGTTTTTACCTTAGCGGCATGTGGAAATTCTAA
CTCAGGGGCTTCAAAGACTTATTCTTATGTCTATTCAACAGACCCAGATACCTTGGATTATACAAATACTAATCGTTCAA
CTACGTCTGATGTTATTGCAAACTTAGTGGATGGACTATTAGAAAATGATAGATACGGAAATCTTGTGCCATCTCTGGCA
GAAGATTGGACAGTGTCGAAAGATGGTTTGACTTATACATATAAGCTTCGGAAGGGTGCTAAATGGTACACTTCTGAGGG
TGAAGAATATGCAGAAGTCAAAGCACAGGACTTTGTTACTGGTTTGAAGCACGCGGCTGACAGCAATTCAGATGCGCTTC
CAATTGTTCAAAGCTCTATCAAAGGCTTGGATGCTTATGTAAAAGGTGAAAGTAAGGATTTCTCAACAGTTGGAGTTAAG
GCGGTTGACGATTACACAGTCCAATATACACTCAACAAGCCAGAAAGTTATTGGAATTCTAAAACCACAATGGGTATTCT
TTTCCCAATTAACGAAGAATTTTTAAAATCATCTGGTAAAGATTTCGGTACCGTAAAACCTTCAGGAATTCTCTATAACG
GTCCATATTTCCTGAAGTCCTTCACATCGAAATCATCTATTGAATATACAAAAAATGACAACTATTGGGATAAGAACAAT
GTGAAGATTTCAGACGTCAAGTTGACCTACTTTGATGGTTCTGATCAAGAAGCGCTTGTTCGTAACTTTAAAGATGGTAC
ATATACACAAGCTCGTTTGTATCCAAATAGTTCAAGTTATGCTTCGGTGCAAAAACAATACAAAGACAATATTGTATACT
CTCCTCAAGATGCATCATCATTCTTTTACGCCTTTAACTACAACCGTAAAGCCTACAATTTTACAGCCAAGACAACAGAT
GCTCAAAAGACATCTACAACAGCTGCTCTCTTAAATAAAGATTTCCGTCAGGCTATCAACTTCGCTTTCAATCGGACAGT
TTATGGAGCTCAGCAAAACGGTCAAGAGGGAGCAACTAGCTCACTTAGAAATAGCTTAGTACCGCCAACATTCGTTCAGA
TTGGTGAAAAGAACTTCGGAGATATAGTTGAGAAAGATTTGGTGAGCTATGGTGATGAGTGGAAGGGTGTTAAGTTGGAC
GATGCTCAGGATGGACTCTTTAATGTTGAGAAAGCTAAGGCAGAATTTGCCAAAGCAAAAGAAGCTCTCCAAGCACAAGG
TGTTGAATTCCCGATTCACTTAGATCTTCCTGTTGAACAAACAAACAACCTCTTGGTACAGCAGGCTAATTCATTTAAAC
AATCAGTTGAAGAAGCCCTTGGTAAAGATAATGTTGTTATTGATGTACAGCAAATGTCTACAGAAAATAAAAATAATGTA
ACGTACTTTGCGGAGACTGCGGCTCAAAAAGACTACGATATCAACATTGCTGGTTGGGGTCCTGACTTCCAAGATCCATC
AACTTATTTGAATATTTTTGATCCAGATAAAGGAGATATGCTCCAAAATATCGGTTTGGAAAAAGGACAAAATGCTGATT
TAGCAGACAAACTGGGCTTGAACGAATTTAAGAAATTAAATGAAGAGGCAGATTCTGAAAAACAAGATACAACTGCTCGC
TATACAAAATATGCAGCAGCTCAAGCTTGGTTAACAGATAGCTCTTTGGTCATTCCGATTCAATCAAACGGTGGTAGTCC
GCTTGTTATGAAGGCAGTTCCGTTCACAAAACCTTACTCTCTGGTTGGTATCAAAGGTGATGTTTACGTCTTTAAGTACA
GAGAAGTTCAAAATGACATTGTAACGGCGAAAGACTACAAAGCCGCTGAGAAAAAATGGAAGAAAGAAAAAGAAAAATCA
AATGCCAAAGCTCAAGAAGAATTGGCTGATCATGTTAAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

57.23

100

0.576
  amiA3 Streptococcus thermophilus LMD-9

56.146

100

0.567
  amiA3 Streptococcus thermophilus LMG 18311

55.994

100

0.565