Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY1   Type   Machinery gene
Locus tag   I6L29_RS17605 Genome accession   NZ_CP077238
Coordinates   3724337..3728191 (+) Length   1284 a.a.
NCBI ID   WP_005078458.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS 1399     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3719337..3733191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L29_RS17575 (I6L29_17575) gmk 3719619..3720248 (-) 630 WP_002116973.1 guanylate kinase -
  I6L29_RS17580 (I6L29_17580) ispH 3720371..3721321 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  I6L29_RS17585 (I6L29_17585) fimU 3721491..3721964 (+) 474 WP_016802756.1 pilus assembly FimT family protein Machinery gene
  I6L29_RS17590 (I6L29_17590) pilV 3721958..3722518 (+) 561 WP_080564113.1 type IV pilus modification protein PilV Machinery gene
  I6L29_RS17595 (I6L29_17595) pilW 3722518..3723519 (+) 1002 WP_002116811.1 PilW family protein Machinery gene
  I6L29_RS17600 (I6L29_17600) pilX 3723516..3724325 (+) 810 WP_005078460.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  I6L29_RS17605 (I6L29_17605) pilY1 3724337..3728191 (+) 3855 WP_005078458.1 PilC/PilY family type IV pilus protein Machinery gene
  I6L29_RS17610 (I6L29_17610) pilY2 3728202..3728684 (+) 483 WP_005078457.1 type IV pilin protein Machinery gene
  I6L29_RS17615 (I6L29_17615) pilE 3728681..3729106 (+) 426 WP_005078455.1 type IV pilin protein Machinery gene
  I6L29_RS17620 (I6L29_17620) rpsP 3729254..3729505 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  I6L29_RS17625 (I6L29_17625) rimM 3729525..3730073 (+) 549 WP_005078453.1 ribosome maturation factor RimM -
  I6L29_RS17630 (I6L29_17630) trmD 3730116..3730871 (+) 756 WP_005078451.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  I6L29_RS17635 (I6L29_17635) rplS 3731091..3731459 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  I6L29_RS17640 (I6L29_17640) lip 3731511..3732452 (-) 942 WP_014207808.1 lipase family alpha/beta hydrolase -

Sequence

Protein


Download         Length: 1284 a.a.        Molecular weight: 137938.39 Da        Isoelectric Point: 7.7449

>NTDB_id=580199 I6L29_RS17605 WP_005078458.1 3724337..3728191(+) (pilY1) [Acinetobacter pittii strain FDAARGOS 1399]
MKLKLKNFKPNNLWYAICSSSVAFTWLMTSSVVQASDLQIYASPTAGKKTIVMMLDTSGSMTNNSYGENRLAMLKNGMNA
FLASNNPVLNDTRVGLGNFSANGDSRSGQVLVAAAPLGDASTLNTVGSQRYKLKQAVANLTAGGSTPSAHAYAEAAAYLM
GTTTYSEANYAIRKDSYIRRVRKSDNRTEYSYCTNYRDSQIDTTNLWQPCRSNNYWSNWSTSNPGVDTATAYDTSSDWTY
SYTYYYTTFNYAVANADSGIPKSKSNDTASNPNIVVDRNASNLNAIYQSPLPAVANRQSCDGQGIYFLSDGEPNNTTNTR
SATVMSTALGSTLGANFTCSGGLSNTTADSGWACMGEFAKRLFDKTKNPAGVSIQTAFVGFGSDFSSLSSSDVKNACRLS
SRTQADRKSDDNCSPNQTTNAVAAPGYGNGGFFPTQSAQGVTDSVIAFINNLDKVPLEPLTTGAISVPYDALNPKNLQEY
GYLRAFEPNPANTYLTWRGNLKKYHVVLSGTNAGAFEANTGGLVYNATGAFRTGTKDYWNSSTYNDGGKVFFGGSYAKVP
LPIAGQNETRDEEGNITKYYYAVQTKIRNLFTDVSAVASDGSLTKLSTSGTNLLKIPAAPPEGTNPFDSVANTASYVLGK
FNASTGQDILKAFPISLKLKILNYLGYSTDISATTLPSSLVTSNEPYLSMGGSIHSLPVQLTYNGTLDENGNLTSAREQS
ILYGTMEGGLHIVDASTGVEQMAFVPADILNDPVASKALVVGQSDATAPAHGMDGAWVSDPAYSITTTGSGSSAVSKVTA
KQMNIYGGMRMGGSSYYGLNVLNPASPKLLFRVGADQTDYSRMGQSWSKPVLANIRYNGVIKRVMIVGGGYDQCYENPNI
TLSNSCFTNGKAKGNAVYIIDAKTGERLWWTSDTGSNIDNSNMKHSIVSRISTLDRDADGLVDHLYFGDLGGQIFRIDLN
NNQTKTNSTYSSFGIRVVRLANLATNDSTYDASNDYTAGNAPRFYEPPTVTIHDYGIRTFITVGIASGDRSTPLDVYPLT
GREGMSPSTALSGRPVNNVYGIIDKDFIKKNLMSLTDSQLETKDITRSTLRKNPQILRSGETRVAQIFFPNTGGGQSGWY
RSLSSMSDGTEKANNSFRIKGGLKAFEEPMAVTGTLIVPVYDPQGTGIVAADPCLPRVVGETDQQTFCLPFGACLNSDGS
IDQNKENGSGFKTQTGTNCPVGASECNKNVIGSGIRGIAFVPKRDEPPVTNSCGKLQLSGNESGTGEWQCTSHLVPTRWY
ERYR

Nucleotide


Download         Length: 3855 bp        

>NTDB_id=580199 I6L29_RS17605 WP_005078458.1 3724337..3728191(+) (pilY1) [Acinetobacter pittii strain FDAARGOS 1399]
GTGAAACTAAAATTGAAGAATTTTAAGCCAAATAATTTATGGTATGCCATCTGTTCGAGTTCAGTTGCTTTTACATGGCT
AATGACAAGCTCCGTTGTGCAGGCGAGTGATTTACAAATTTATGCTTCACCTACAGCTGGTAAAAAAACCATTGTGATGA
TGTTGGATACATCAGGAAGTATGACCAACAATAGTTATGGCGAAAACCGTCTGGCTATGCTTAAAAATGGTATGAATGCT
TTTTTAGCAAGTAATAATCCTGTTTTAAATGACACTCGTGTGGGGTTGGGAAATTTCTCTGCAAATGGTGATAGCCGAAG
TGGGCAGGTTCTAGTGGCTGCTGCTCCTTTAGGAGATGCGAGTACGTTAAATACAGTGGGTTCTCAACGTTATAAATTAA
AACAGGCTGTTGCAAATTTAACTGCTGGCGGGTCAACGCCTTCAGCACATGCTTATGCGGAAGCTGCTGCTTATTTGATG
GGTACAACGACCTATTCAGAGGCAAATTATGCCATTCGAAAAGATAGCTATATAAGGCGTGTGCGAAAATCTGATAATAG
AACGGAATACTCATATTGTACGAATTATCGCGATTCACAAATCGATACTACAAATCTATGGCAACCTTGTCGCTCTAATA
ACTATTGGAGTAACTGGTCAACTTCTAATCCGGGTGTGGATACGGCAACTGCTTATGATACTTCGTCGGATTGGACCTAT
TCTTATACTTATTACTACACCACCTTTAATTATGCTGTAGCAAATGCAGATAGTGGTATCCCAAAATCAAAATCAAATGA
TACAGCTAGCAATCCCAATATTGTTGTAGATAGAAATGCCTCTAATTTAAATGCCATTTACCAATCTCCTTTGCCTGCGG
TGGCCAATCGTCAGAGTTGTGATGGGCAAGGAATCTACTTTTTATCAGATGGAGAACCGAACAATACAACAAATACACGT
TCGGCAACTGTAATGTCGACAGCCCTAGGCAGCACTTTGGGAGCAAATTTTACTTGTTCTGGAGGTTTATCTAACACGAC
AGCAGACTCTGGTTGGGCCTGTATGGGGGAATTTGCAAAAAGATTATTTGATAAAACAAAAAATCCGGCTGGAGTTTCTA
TTCAAACAGCATTTGTCGGTTTTGGTAGTGACTTTTCTAGTTTAAGTTCTTCTGATGTAAAAAATGCCTGTCGTTTAAGT
TCGAGAACCCAAGCTGATCGTAAAAGTGATGATAATTGTTCGCCGAATCAGACCACAAATGCGGTCGCTGCACCAGGTTA
TGGAAATGGAGGATTTTTCCCTACCCAAAGTGCGCAAGGTGTAACAGATAGTGTTATCGCATTTATTAATAACTTAGATA
AAGTTCCTTTAGAACCCTTAACCACAGGTGCTATCTCTGTTCCTTATGATGCACTAAATCCTAAAAATTTACAGGAATAT
GGTTACTTACGTGCTTTTGAGCCAAACCCGGCTAACACCTACTTAACATGGCGAGGAAATTTAAAGAAATATCATGTTGT
TTTATCGGGAACAAATGCTGGTGCTTTCGAAGCTAATACTGGTGGGTTGGTTTACAACGCAACTGGGGCATTTAGAACGG
GTACGAAAGATTATTGGAATAGCTCTACTTATAATGATGGAGGTAAAGTCTTTTTTGGTGGTTCATATGCAAAAGTTCCT
TTACCAATTGCTGGACAAAATGAAACACGTGATGAAGAAGGAAATATCACAAAATATTATTACGCAGTACAAACTAAAAT
CCGCAACTTATTTACTGATGTTTCCGCCGTCGCATCAGATGGTAGCTTAACGAAGCTATCAACTTCTGGAACTAATTTGC
TAAAAATTCCAGCTGCTCCACCAGAAGGAACTAATCCTTTTGATAGTGTGGCTAATACAGCAAGTTATGTTTTAGGAAAA
TTTAATGCATCAACTGGACAAGATATTTTAAAAGCTTTCCCGATTAGCTTGAAATTAAAAATATTAAATTATCTAGGTTA
CTCAACTGATATTAGCGCTACGACTTTACCTTCGTCATTAGTTACATCGAATGAACCCTATTTATCGATGGGCGGTAGTA
TTCACTCTTTACCGGTACAACTTACCTATAATGGAACATTAGATGAAAATGGGAATTTAACATCTGCGCGTGAACAATCC
ATTCTCTATGGAACGATGGAAGGTGGTCTGCATATTGTGGATGCCTCAACTGGTGTAGAACAAATGGCTTTCGTTCCTGC
CGATATATTAAATGATCCAGTTGCATCAAAAGCTTTAGTGGTTGGCCAAAGTGATGCTACAGCTCCTGCTCACGGTATGG
ATGGGGCTTGGGTATCTGACCCTGCATATAGTATTACTACAACAGGAAGCGGTAGTTCAGCAGTATCAAAAGTAACTGCA
AAGCAAATGAATATTTATGGTGGCATGCGAATGGGGGGCAGCAGCTATTATGGCTTAAATGTCTTAAATCCTGCTTCACC
TAAGCTTCTCTTTAGAGTAGGAGCAGATCAAACTGATTATAGTCGTATGGGGCAGAGTTGGTCTAAACCTGTACTTGCAA
ATATACGTTATAACGGAGTTATTAAACGGGTTATGATTGTTGGTGGTGGCTACGACCAATGTTATGAAAACCCGAATATT
ACCTTGAGTAATTCTTGCTTTACGAATGGAAAAGCAAAAGGGAATGCTGTTTATATTATTGATGCTAAAACTGGGGAACG
CTTATGGTGGACTAGTGATACAGGCTCTAATATAGATAACTCTAATATGAAGCACAGTATTGTTAGTCGCATTAGTACCT
TAGATCGAGATGCTGATGGTTTAGTCGACCATTTATATTTTGGCGATTTAGGCGGACAAATTTTCCGTATCGATCTTAAT
AATAACCAGACAAAAACAAATTCAACTTATAGCAGTTTCGGTATTCGAGTTGTTCGATTAGCCAATTTAGCAACGAATGA
CTCAACTTATGATGCCTCGAACGACTATACCGCTGGGAATGCGCCGCGTTTTTATGAACCGCCAACAGTGACAATTCACG
ATTATGGAATCCGCACTTTTATTACTGTCGGTATTGCTTCAGGTGACCGTAGTACACCTTTAGATGTTTATCCGCTTACA
GGTCGTGAGGGGATGTCACCGAGCACCGCATTAAGCGGAAGACCTGTAAACAATGTCTATGGGATTATCGATAAAGACTT
TATCAAAAAGAATCTGATGTCTTTAACAGATAGCCAGCTTGAAACAAAAGATATTACTCGATCGACGCTTCGAAAAAATC
CACAAATTTTACGATCTGGGGAAACACGAGTAGCACAGATTTTCTTTCCAAACACTGGGGGGGGGCAAAGTGGTTGGTAT
CGCTCACTTTCTAGTATGAGCGATGGCACAGAGAAAGCTAATAATAGTTTCCGTATTAAAGGAGGTCTTAAAGCTTTTGA
AGAACCTATGGCCGTTACGGGGACTTTAATTGTGCCTGTTTATGATCCGCAGGGAACAGGCATTGTAGCGGCAGACCCAT
GTTTACCCCGTGTAGTAGGTGAAACTGACCAGCAGACGTTCTGTTTACCATTTGGCGCCTGCCTTAATTCTGATGGGTCA
ATTGATCAAAATAAAGAGAATGGAAGTGGATTTAAAACACAAACTGGTACTAATTGCCCAGTAGGAGCTTCTGAATGTAA
TAAAAACGTTATTGGCTCCGGTATTCGCGGCATAGCATTTGTTCCAAAAAGAGATGAACCTCCAGTGACTAATAGTTGTG
GGAAATTACAACTGTCTGGAAACGAGAGTGGAACGGGCGAGTGGCAGTGTACAAGTCATTTAGTTCCTACACGCTGGTAT
GAGCGTTATCGCTAA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(715-965)

von Willebrand factor type A domain (VWA_2)

(51-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY1 Acinetobacter baumannii D1279779

85.194

100

0.856