Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   I6L29_RS17615 Genome accession   NZ_CP077238
Coordinates   3728681..3729106 (+) Length   141 a.a.
NCBI ID   WP_005078455.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS 1399     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3723681..3734106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L29_RS17605 (I6L29_17605) pilY1 3724337..3728191 (+) 3855 WP_005078458.1 PilC/PilY family type IV pilus protein Machinery gene
  I6L29_RS17610 (I6L29_17610) pilY2 3728202..3728684 (+) 483 WP_005078457.1 type IV pilin protein Machinery gene
  I6L29_RS17615 (I6L29_17615) pilE 3728681..3729106 (+) 426 WP_005078455.1 type IV pilin protein Machinery gene
  I6L29_RS17620 (I6L29_17620) rpsP 3729254..3729505 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  I6L29_RS17625 (I6L29_17625) rimM 3729525..3730073 (+) 549 WP_005078453.1 ribosome maturation factor RimM -
  I6L29_RS17630 (I6L29_17630) trmD 3730116..3730871 (+) 756 WP_005078451.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  I6L29_RS17635 (I6L29_17635) rplS 3731091..3731459 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  I6L29_RS17640 (I6L29_17640) lip 3731511..3732452 (-) 942 WP_014207808.1 lipase family alpha/beta hydrolase -
  I6L29_RS17645 (I6L29_17645) - 3732568..3733599 (-) 1032 WP_005078447.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15186.35 Da        Isoelectric Point: 7.1292

>NTDB_id=580201 I6L29_RS17615 WP_005078455.1 3728681..3729106(+) (pilE) [Acinetobacter pittii strain FDAARGOS 1399]
MKNGFTLIELMIVVAIIAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLEAEKIVHNRYPSNATITSIYGSSVSPQQG
QALYNLAFSSITDSSWVLTATPIATSSQAGDGIICLNDQGQKFWAKGATDCALSATSNWLQ

Nucleotide


Download         Length: 426 bp        

>NTDB_id=580201 I6L29_RS17615 WP_005078455.1 3728681..3729106(+) (pilE) [Acinetobacter pittii strain FDAARGOS 1399]
ATGAAGAATGGTTTTACCTTAATAGAACTTATGATTGTAGTAGCAATAATTGCAATTTTAGCAGCTATAGCGACACCTTC
ATATTTGCAATATTTACGCAAAGGGCATCGTACAGCTGTTCAATCTGAAATGATGAATATTGCCCAAACATTAGAAGCAG
AAAAAATAGTTCACAATCGTTATCCATCGAATGCGACGATTACTTCGATTTATGGTTCTAGTGTCAGCCCTCAACAAGGT
CAAGCCTTATATAACTTAGCTTTTTCTAGTATAACTGATTCAAGCTGGGTGTTAACGGCTACACCTATTGCTACTAGTTC
TCAAGCTGGTGATGGGATCATTTGTCTTAATGATCAAGGGCAAAAATTTTGGGCAAAAGGTGCAACTGATTGTGCGTTAT
CTGCCACATCAAATTGGCTACAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

85.106

100

0.851
  comF Acinetobacter baylyi ADP1

50.714

99.291

0.504