Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   I6L29_RS17585 Genome accession   NZ_CP077238
Coordinates   3721491..3721964 (+) Length   157 a.a.
NCBI ID   WP_016802756.1    Uniprot ID   A0A1C2SAU9
Organism   Acinetobacter pittii strain FDAARGOS 1399     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3716491..3726964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L29_RS17560 (I6L29_17560) spoT 3716953..3719058 (-) 2106 WP_002116807.1 RelA/SpoT family protein -
  I6L29_RS17565 (I6L29_17565) - 3719074..3719229 (-) 156 WP_014207816.1 hypothetical protein -
  I6L29_RS17570 (I6L29_17570) rpoZ 3719268..3719546 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  I6L29_RS17575 (I6L29_17575) gmk 3719619..3720248 (-) 630 WP_002116973.1 guanylate kinase -
  I6L29_RS17580 (I6L29_17580) ispH 3720371..3721321 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  I6L29_RS17585 (I6L29_17585) fimU 3721491..3721964 (+) 474 WP_016802756.1 pilus assembly FimT family protein Machinery gene
  I6L29_RS17590 (I6L29_17590) pilV 3721958..3722518 (+) 561 WP_080564113.1 type IV pilus modification protein PilV Machinery gene
  I6L29_RS17595 (I6L29_17595) pilW 3722518..3723519 (+) 1002 WP_002116811.1 PilW family protein Machinery gene
  I6L29_RS17600 (I6L29_17600) pilX 3723516..3724325 (+) 810 WP_005078460.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16939.62 Da        Isoelectric Point: 7.7942

>NTDB_id=580195 I6L29_RS17585 WP_016802756.1 3721491..3721964(+) (fimU) [Acinetobacter pittii strain FDAARGOS 1399]
MRGIIPQDGFTLVELMVTIAVMAIIAMMAAPSMSNLLESKRLDGNQRDLINTLSEAKNQAILGRQDVSINLNSTALNTPT
SLNWKADSNNSLELKNIAADGTQSSLTATTLTFNANGVITNITQDTLLSICNSKINKKKILILTKLGTLIFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=580195 I6L29_RS17585 WP_016802756.1 3721491..3721964(+) (fimU) [Acinetobacter pittii strain FDAARGOS 1399]
ATGAGGGGAATTATTCCGCAAGACGGGTTCACCTTGGTTGAGCTTATGGTGACGATTGCGGTCATGGCTATTATCGCGAT
GATGGCTGCACCATCTATGTCGAATTTATTAGAAAGCAAACGACTAGATGGAAACCAACGAGATCTAATCAATACTTTAT
CGGAAGCAAAGAACCAAGCCATACTTGGTCGACAAGATGTATCCATTAATCTGAATTCAACAGCTTTAAATACTCCCACT
TCCTTGAATTGGAAAGCTGATTCCAATAACAGTCTTGAGCTTAAAAATATCGCTGCTGATGGTACGCAGAGTTCATTAAC
AGCAACGACTCTAACTTTTAATGCGAATGGGGTGATAACCAATATTACCCAAGATACACTTTTATCTATTTGTAATTCAA
AAATAAATAAAAAGAAAATTCTTATTTTAACAAAGCTTGGCACATTAATTTTTAAAGCTGAGGAGACATGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C2SAU9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

87.898

100

0.879