Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   I6L29_RS17600 Genome accession   NZ_CP077238
Coordinates   3723516..3724325 (+) Length   269 a.a.
NCBI ID   WP_005078460.1    Uniprot ID   A0A009I3R3
Organism   Acinetobacter pittii strain FDAARGOS 1399     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3718516..3729325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L29_RS17565 (I6L29_17565) - 3719074..3719229 (-) 156 WP_014207816.1 hypothetical protein -
  I6L29_RS17570 (I6L29_17570) rpoZ 3719268..3719546 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  I6L29_RS17575 (I6L29_17575) gmk 3719619..3720248 (-) 630 WP_002116973.1 guanylate kinase -
  I6L29_RS17580 (I6L29_17580) ispH 3720371..3721321 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  I6L29_RS17585 (I6L29_17585) fimU 3721491..3721964 (+) 474 WP_016802756.1 pilus assembly FimT family protein Machinery gene
  I6L29_RS17590 (I6L29_17590) pilV 3721958..3722518 (+) 561 WP_080564113.1 type IV pilus modification protein PilV Machinery gene
  I6L29_RS17595 (I6L29_17595) pilW 3722518..3723519 (+) 1002 WP_002116811.1 PilW family protein Machinery gene
  I6L29_RS17600 (I6L29_17600) pilX 3723516..3724325 (+) 810 WP_005078460.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  I6L29_RS17605 (I6L29_17605) pilY1 3724337..3728191 (+) 3855 WP_005078458.1 PilC/PilY family type IV pilus protein Machinery gene
  I6L29_RS17610 (I6L29_17610) pilY2 3728202..3728684 (+) 483 WP_005078457.1 type IV pilin protein Machinery gene
  I6L29_RS17615 (I6L29_17615) pilE 3728681..3729106 (+) 426 WP_005078455.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 28532.34 Da        Isoelectric Point: 7.2645

>NTDB_id=580198 I6L29_RS17600 WP_005078460.1 3723516..3724325(+) (pilX) [Acinetobacter pittii strain FDAARGOS 1399]
MTHLIHKSRSKEKGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNPTTLTNITNVI
GAALKEHESNPGAEYNFCYKPVSTATNFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTTDYGSNRQAVVTQVAVSVPTD
AASDIPGSNLPRGTNTSEGTQLPKSMLSTQRIRVITTAFLPAYASTSIETLQRDCLSTSSAKISDNFDTALTAKQTLAEC
LANHNVPFSTQVQEFNYTNKLTQITAPGS

Nucleotide


Download         Length: 810 bp        

>NTDB_id=580198 I6L29_RS17600 WP_005078460.1 3723516..3724325(+) (pilX) [Acinetobacter pittii strain FDAARGOS 1399]
ATGACCCATTTAATTCATAAGAGTAGATCTAAGGAAAAAGGGGCAACCCTTATTGTTGTGCTTATTATTTTATTGATTGT
TATTTCTGTAGGCGTTTTAGCAATAAGAGTGGCTATTGTTTCTTTAAAAGTTGCTACCAATAGCCAAGTTAGCCAATTAA
ATTTTCAGTCATCTGACACTCCTTTAGAACTCATTGTGCAGATGAATCCTACCACCCTAACTAATATTACTAATGTGATT
GGTGCCGCGCTTAAAGAGCATGAAAGTAACCCTGGTGCGGAATACAACTTTTGTTATAAGCCTGTTTCTACAGCAACAAA
TTTTGCTCAGACCAGAGGTGCAAGTTTACTTCGAGCAGGAAGCGCTAATAATGCAGTCGTTGAAGATGGCGGCGTAGCGG
GTTTCTGCGATTTAACAACTGACTATGGAAGTAATCGTCAAGCAGTGGTCACCCAAGTTGCTGTAAGTGTTCCAACAGAC
GCTGCTAGCGATATTCCAGGCTCAAATTTACCACGAGGAACAAACACCTCGGAAGGTACGCAACTTCCTAAAAGTATGTT
GTCTACGCAACGTATTCGAGTGATTACAACTGCTTTTTTGCCAGCCTATGCATCTACCTCTATTGAAACTTTACAAAGAG
ATTGCTTAAGCACGAGTTCGGCAAAAATTAGCGACAATTTTGATACCGCATTAACAGCTAAACAAACATTGGCGGAGTGT
TTGGCAAATCATAACGTGCCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAACTCACTCAAATTACGGCACC
AGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009I3R3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

90.074

100

0.911