Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   I6L27_RS16665 Genome accession   NZ_CP077232
Coordinates   3534858..3535667 (+) Length   269 a.a.
NCBI ID   WP_216967683.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS 1397     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3529858..3540667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L27_RS16630 (I6L27_16635) - 3530414..3530569 (-) 156 WP_216967679.1 hypothetical protein -
  I6L27_RS16635 (I6L27_16640) rpoZ 3530608..3530886 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  I6L27_RS16640 (I6L27_16645) gmk 3530959..3531588 (-) 630 WP_002116973.1 guanylate kinase -
  I6L27_RS16645 (I6L27_16650) ispH 3531711..3532661 (+) 951 WP_016142896.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  I6L27_RS16650 (I6L27_16655) fimU 3532833..3533306 (+) 474 WP_216967680.1 pilus assembly FimT family protein Machinery gene
  I6L27_RS16655 (I6L27_16660) pilV 3533300..3533860 (+) 561 WP_216967681.1 type IV pilus modification protein PilV Machinery gene
  I6L27_RS16660 (I6L27_16665) pilW 3533860..3534861 (+) 1002 WP_216967682.1 PilW family protein Machinery gene
  I6L27_RS16665 (I6L27_16670) pilX 3534858..3535667 (+) 810 WP_216967683.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  I6L27_RS16670 (I6L27_16675) pilY1 3535679..3539533 (+) 3855 WP_216967684.1 PilC/PilY family type IV pilus protein Machinery gene
  I6L27_RS16675 (I6L27_16680) pilY2 3539544..3540026 (+) 483 WP_017387038.1 type IV pilin protein Machinery gene
  I6L27_RS16680 (I6L27_16685) pilE 3540023..3540448 (+) 426 WP_216967685.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 28547.31 Da        Isoelectric Point: 7.2645

>NTDB_id=580095 I6L27_RS16665 WP_216967683.1 3534858..3535667(+) (pilX) [Acinetobacter pittii strain FDAARGOS 1397]
MTHLTHKSRSKEKGATLIVVLIILLIVISVGILAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNPTNLTNITNVI
GAALKEHESNPGAEYNFCYKPVSTATNFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSIPTD
AASDIPGSNLPRGTNTSEGTQLPKSMLSTQRIRVITTAFLPAYASTSIETLQRDCLSTSSAKISDNFDTALTAKQTLAEC
LANHNVPFSTQVQEFNYTNKLTQITAPGS

Nucleotide


Download         Length: 810 bp        

>NTDB_id=580095 I6L27_RS16665 WP_216967683.1 3534858..3535667(+) (pilX) [Acinetobacter pittii strain FDAARGOS 1397]
ATGACCCATTTAACTCATAAAAGTAGGTCTAAAGAAAAAGGGGCAACCCTTATTGTTGTGCTTATTATTTTATTGATTGT
TATTTCTGTAGGCATTTTAGCAATAAGAGTGGCTATTGTTTCTTTAAAAGTTGCTACCAATAGCCAAGTTAGCCAATTAA
ATTTTCAGTCATCTGACACGCCTTTAGAACTCATTGTACAGATGAATCCTACCAATCTAACTAATATTACTAATGTGATT
GGGGCGGCGCTCAAAGAGCATGAAAGTAACCCGGGTGCGGAATACAACTTTTGTTATAAACCTGTTTCTACAGCAACAAA
TTTTGCTCAGACTAGAGGTGCAAGTTTACTTCGAGCAGGAAGCGCTAATAATGCAGTCGTTGAAGATGGCGGCGTAGCGG
GTTTCTGTGATTTAACAAGTGACTATGGAAGTAATCGCCAAGCAGTGGTTACTCAAGTTGCTGTAAGTATTCCAACAGAT
GCTGCTAGTGATATTCCAGGTTCAAATTTACCGCGAGGAACAAATACTTCGGAAGGTACACAACTTCCTAAAAGCATGTT
GTCTACGCAGCGTATTCGAGTGATTACAACAGCTTTTTTACCAGCCTATGCATCTACCTCTATCGAAACTTTACAAAGAG
ATTGCTTAAGCACGAGTTCGGCAAAAATTAGCGACAATTTTGATACCGCTTTAACAGCTAAACAAACATTGGCTGAGTGT
TTAGCAAATCATAACGTGCCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTCACTCAAATTACGGCACC
AGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

90.074

100

0.911