Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   I6L27_RS16655 Genome accession   NZ_CP077232
Coordinates   3533300..3533860 (+) Length   186 a.a.
NCBI ID   WP_216967681.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS 1397     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3528300..3538860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L27_RS16630 (I6L27_16635) - 3530414..3530569 (-) 156 WP_216967679.1 hypothetical protein -
  I6L27_RS16635 (I6L27_16640) rpoZ 3530608..3530886 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  I6L27_RS16640 (I6L27_16645) gmk 3530959..3531588 (-) 630 WP_002116973.1 guanylate kinase -
  I6L27_RS16645 (I6L27_16650) ispH 3531711..3532661 (+) 951 WP_016142896.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  I6L27_RS16650 (I6L27_16655) fimU 3532833..3533306 (+) 474 WP_216967680.1 pilus assembly FimT family protein Machinery gene
  I6L27_RS16655 (I6L27_16660) pilV 3533300..3533860 (+) 561 WP_216967681.1 type IV pilus modification protein PilV Machinery gene
  I6L27_RS16660 (I6L27_16665) pilW 3533860..3534861 (+) 1002 WP_216967682.1 PilW family protein Machinery gene
  I6L27_RS16665 (I6L27_16670) pilX 3534858..3535667 (+) 810 WP_216967683.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 19877.83 Da        Isoelectric Point: 8.2175

>NTDB_id=580093 I6L27_RS16655 WP_216967681.1 3533300..3533860(+) (pilV) [Acinetobacter pittii strain FDAARGOS 1397]
MLMRGSKQKTQAGVGLLEVLVALILLAIGILGYVALQIRAMDASSEALSKSQAMMIMRGLAENIRVNNSQASQYPAFVRS
YSNYSSTTAAPTSCFNAACTPSQLAQFDAYQVARNADQLGMKITMTNCPGVTTTMAQQRQCLFVFWGKTSPVITTNGGST
SADVSSCMSTDGVYANNSNCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=580093 I6L27_RS16655 WP_216967681.1 3533300..3533860(+) (pilV) [Acinetobacter pittii strain FDAARGOS 1397]
ATGTTAATGAGGGGCTCTAAGCAAAAAACTCAAGCTGGGGTTGGTTTATTAGAAGTATTGGTCGCCTTAATTTTACTTGC
GATAGGAATTTTAGGATATGTCGCTTTGCAAATTCGGGCTATGGATGCTTCTTCAGAAGCATTAAGTAAATCACAAGCTA
TGATGATTATGAGAGGATTAGCAGAAAATATTCGCGTAAATAATTCTCAAGCTAGTCAATATCCTGCATTTGTTCGTAGT
TATAGCAATTATTCATCTACTACCGCAGCTCCGACTTCCTGTTTCAATGCCGCTTGTACGCCTTCTCAACTTGCTCAATT
TGATGCATATCAAGTAGCAAGAAATGCTGATCAACTTGGCATGAAAATCACAATGACAAATTGTCCTGGAGTTACAACCA
CAATGGCCCAGCAGAGGCAGTGTTTGTTTGTTTTTTGGGGGAAAACCTCTCCGGTAATTACAACAAATGGGGGAAGTACT
AGCGCGGATGTGTCGAGCTGTATGAGTACAGATGGTGTTTATGCCAATAATTCAAATTGTTTGATGATGGAGGCATATTA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

82.258

100

0.823
  pilV Acinetobacter baylyi ADP1

35.829

100

0.36