Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   I6L27_RS16650 Genome accession   NZ_CP077232
Coordinates   3532833..3533306 (+) Length   157 a.a.
NCBI ID   WP_216967680.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS 1397     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3527833..3538306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L27_RS16625 (I6L27_16630) spoT 3528293..3530398 (-) 2106 WP_057105808.1 RelA/SpoT family protein -
  I6L27_RS16630 (I6L27_16635) - 3530414..3530569 (-) 156 WP_216967679.1 hypothetical protein -
  I6L27_RS16635 (I6L27_16640) rpoZ 3530608..3530886 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  I6L27_RS16640 (I6L27_16645) gmk 3530959..3531588 (-) 630 WP_002116973.1 guanylate kinase -
  I6L27_RS16645 (I6L27_16650) ispH 3531711..3532661 (+) 951 WP_016142896.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  I6L27_RS16650 (I6L27_16655) fimU 3532833..3533306 (+) 474 WP_216967680.1 pilus assembly FimT family protein Machinery gene
  I6L27_RS16655 (I6L27_16660) pilV 3533300..3533860 (+) 561 WP_216967681.1 type IV pilus modification protein PilV Machinery gene
  I6L27_RS16660 (I6L27_16665) pilW 3533860..3534861 (+) 1002 WP_216967682.1 PilW family protein Machinery gene
  I6L27_RS16665 (I6L27_16670) pilX 3534858..3535667 (+) 810 WP_216967683.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16910.49 Da        Isoelectric Point: 8.5281

>NTDB_id=580092 I6L27_RS16650 WP_216967680.1 3532833..3533306(+) (fimU) [Acinetobacter pittii strain FDAARGOS 1397]
MRGIIPQDGFTLVELMVTIAVMAIIAMMAAPSMSNLLESKRLDENQRDLINTLSESKSQAILGRQDVSINLNSTASNTPT
SFNWKAASNSTLELKNIAANGTQSSSTATTLTFNANGVVTNITQDTLLSICNSKINKKKIIILTKLGTLIFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=580092 I6L27_RS16650 WP_216967680.1 3532833..3533306(+) (fimU) [Acinetobacter pittii strain FDAARGOS 1397]
ATGAGGGGAATTATTCCGCAAGACGGGTTCACCTTGGTTGAACTTATGGTGACAATTGCGGTCATGGCTATTATCGCGAT
GATGGCCGCGCCATCTATGTCGAATTTATTAGAAAGCAAACGACTAGATGAAAATCAACGAGACCTAATCAATACTTTGT
CAGAATCAAAGAGCCAAGCAATACTTGGTCGACAAGATGTATCCATTAATCTGAATTCAACAGCCTCAAATACACCGACT
TCTTTTAATTGGAAAGCTGCTTCCAATAGCACTCTTGAGCTTAAAAATATCGCTGCTAATGGTACACAGAGCTCATCAAC
AGCGACGACTTTAACTTTTAATGCAAATGGAGTGGTAACCAATATTACTCAAGATACGCTTTTATCTATTTGTAATTCAA
AAATAAATAAAAAGAAAATTATTATTTTAACGAAGCTTGGCACATTAATTTTTAAAGCTGAGGAGACATGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

88.535

100

0.885