Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   I6L27_RS16675 Genome accession   NZ_CP077232
Coordinates   3539544..3540026 (+) Length   160 a.a.
NCBI ID   WP_017387038.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS 1397     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3534544..3545026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L27_RS16665 (I6L27_16670) pilX 3534858..3535667 (+) 810 WP_216967683.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  I6L27_RS16670 (I6L27_16675) pilY1 3535679..3539533 (+) 3855 WP_216967684.1 PilC/PilY family type IV pilus protein Machinery gene
  I6L27_RS16675 (I6L27_16680) pilY2 3539544..3540026 (+) 483 WP_017387038.1 type IV pilin protein Machinery gene
  I6L27_RS16680 (I6L27_16685) pilE 3540023..3540448 (+) 426 WP_216967685.1 type IV pilin protein Machinery gene
  I6L27_RS16685 (I6L27_16690) rpsP 3540596..3540847 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  I6L27_RS16690 (I6L27_16695) rimM 3540867..3541415 (+) 549 WP_002116736.1 ribosome maturation factor RimM -
  I6L27_RS16695 (I6L27_16700) trmD 3541458..3542213 (+) 756 WP_057105812.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  I6L27_RS16700 (I6L27_16705) rplS 3542433..3542801 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  I6L27_RS16705 (I6L27_16710) lip 3542853..3543794 (-) 942 WP_080648732.1 lipase family alpha/beta hydrolase -
  I6L27_RS16710 (I6L27_16715) - 3543910..3544941 (-) 1032 WP_216967686.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17535.81 Da        Isoelectric Point: 8.4721

>NTDB_id=580097 I6L27_RS16675 WP_017387038.1 3539544..3540026(+) (pilY2) [Acinetobacter pittii strain FDAARGOS 1397]
MNKYYILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKGEILKLAEQLERHKSKNFTYRGFTTTSVTLP
RGGYTIEISDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGTVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=580097 I6L27_RS16675 WP_017387038.1 3539544..3540026(+) (pilY2) [Acinetobacter pittii strain FDAARGOS 1397]
ATGAATAAATATTATATTCTGCGGTTTAATCAGGGCGTTACCTTGATTGAGCTCATGGTTGTCATCGTGATTGTCGCTAT
TTTTGCTTCGATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCGACGGCTTCTGCTGCTAAAGGTGAAATTCTAA
AATTGGCAGAACAGTTGGAACGGCATAAATCCAAGAACTTTACCTATAGAGGATTTACTACGACATCTGTAACTTTGCCA
CGGGGTGGTTATACGATTGAAATTAGTGATGATACGACGACAGGAAATTTATTAACGAATGCTGCTGCAAATGGGCAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGCCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAACAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

95

100

0.95
  comE Acinetobacter baylyi ADP1

41.279

100

0.444