Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6L27_RS16005 Genome accession   NZ_CP077232
Coordinates   3406811..3407398 (+) Length   195 a.a.
NCBI ID   WP_005804461.1    Uniprot ID   A0A009RDI8
Organism   Acinetobacter pittii strain FDAARGOS 1397     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 3406811..3417211 3406811..3407398 within 0


Gene organization within MGE regions


Location: 3406811..3417211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L27_RS16005 (I6L27_16010) ssb 3406811..3407398 (+) 588 WP_005804461.1 single-stranded DNA-binding protein Machinery gene
  I6L27_RS16010 (I6L27_16015) - 3407616..3408788 (+) 1173 WP_216967628.1 tyrosine-type recombinase/integrase -
  I6L27_RS16015 (I6L27_16020) - 3408793..3410370 (+) 1578 WP_216967629.1 site-specific integrase -
  I6L27_RS16020 (I6L27_16025) - 3410367..3412364 (+) 1998 WP_216967630.1 integrase -
  I6L27_RS16025 (I6L27_16030) - 3412357..3412833 (+) 477 WP_138140437.1 protein kinase -
  I6L27_RS16030 (I6L27_16035) - 3413202..3414215 (+) 1014 WP_138140436.1 nucleoid-associated protein -
  I6L27_RS16035 (I6L27_16040) - 3414208..3415398 (+) 1191 WP_138140435.1 hypothetical protein -
  I6L27_RS16040 (I6L27_16045) - 3415466..3415780 (-) 315 WP_138140434.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  I6L27_RS16045 (I6L27_16050) - 3416196..3416519 (-) 324 WP_216967631.1 AzlD domain-containing protein -
  I6L27_RS16050 (I6L27_16055) - 3416516..3417211 (-) 696 WP_216967632.1 AzlC family ABC transporter permease -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21195.98 Da        Isoelectric Point: 6.4822

>NTDB_id=580086 I6L27_RS16005 WP_005804461.1 3406811..3407398(+) (ssb) [Acinetobacter pittii strain FDAARGOS 1397]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYGQNSGGYGSQG
GFGNGGSNPQAGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=580086 I6L27_RS16005 WP_005804461.1 3406811..3407398(+) (ssb) [Acinetobacter pittii strain FDAARGOS 1397]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAATTTTCAATCGCGACAAGTGAAGCTTGGACTGATAAAAATACCGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTATTGCATAACCGTTTAGGGGAAATTGCTCAGCAATTCTTGCGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCATTACGTACACGTCAGTGGACAGACCAAAATGGCCAAGAGCGTTATACAACAGAAATCCGTGGCGATCAGATGCAGAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTCGCTGGCGGTAATGATTTTAATCAACCACGTTTTAACGCACCTCAAC
AGGGTGGTAATGGTTATCAAAACAATAACAACCAAGGTGGCGGCTACGGCCAAAACAGCGGTGGTTATGGTAGCCAAGGC
GGTTTTGGTAATGGTGGAAGCAATCCTCAAGCAGGTGGTTTTGCGCCTAAAGCTCCGCAACAACCAGCTTCTGCACCAGC
TGATTTAGACGACGATTTACCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009RDI8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.475

100

0.544
  ssb Vibrio cholerae strain A1552

44.5

100

0.456
  ssb Neisseria meningitidis MC58

39.899

100

0.405
  ssb Neisseria gonorrhoeae MS11

38.384

100

0.39