Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   I6L27_RS14040 Genome accession   NZ_CP077232
Coordinates   2977804..2978937 (+) Length   377 a.a.
NCBI ID   WP_216967472.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS 1397     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 2972804..2983937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L27_RS14015 (I6L27_14020) - 2973060..2973266 (-) 207 WP_031947118.1 hypothetical protein -
  I6L27_RS14020 (I6L27_14025) oprC 2973320..2975434 (-) 2115 WP_216967470.1 TonB-dependent copper receptor -
  I6L27_RS14025 (I6L27_14030) - 2975507..2975932 (-) 426 WP_061875246.1 DUF2946 family protein -
  I6L27_RS14030 (I6L27_14035) def 2975976..2976506 (-) 531 WP_016144059.1 peptide deformylase -
  I6L27_RS14035 (I6L27_14040) tsaP 2976629..2977783 (+) 1155 WP_216967471.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  I6L27_RS14040 (I6L27_14045) dprA 2977804..2978937 (+) 1134 WP_216967472.1 DNA-processing protein DprA Machinery gene
  I6L27_RS14045 (I6L27_14050) yrdC 2978989..2979558 (+) 570 WP_216967473.1 L-threonylcarbamoyladenylate synthase -
  I6L27_RS14050 (I6L27_14055) - 2979951..2980871 (-) 921 WP_079748210.1 DMT family transporter -
  I6L27_RS14055 (I6L27_14060) - 2980976..2981629 (-) 654 WP_216969391.1 TetR/AcrR family transcriptional regulator -
  I6L27_RS14060 (I6L27_14065) nepI 2981765..2982979 (+) 1215 WP_061875242.1 MFS transporter -
  I6L27_RS14065 (I6L27_14070) - 2983001..2983765 (+) 765 WP_061875241.1 AraC family transcriptional regulator -

Sequence


Protein


Download         Length: 377 a.a.        Molecular weight: 41927.52 Da        Isoelectric Point: 6.6176

>NTDB_id=580083 I6L27_RS14040 WP_216967472.1 2977804..2978937(+) (dprA) [Acinetobacter pittii strain FDAARGOS 1397]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIVDYFGNCEKAVQPVNLAQWSNLSLHANHLKRVAEFQTAQGQAQFEKLIQQI
HQHTDFILTADDSGYPTQLLPYTDHPPIIFGKGQAQTLLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFYVSSGLAYG
IDEAAHQGASVHQRTIAVTGTGLDSTYPAQNKKLAEHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILVDHPEQIIEDLALPTQWQSQQQNSTEEAVVSNTPEI
PEHLINLYQSLDWVGQDIDQLVLHHSQPVAELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=580083 I6L27_RS14040 WP_216967472.1 2977804..2978937(+) (dprA) [Acinetobacter pittii strain FDAARGOS 1397]
ATGCTTACTCAACTTTCTTCACACCATTACCACACGCTTAAAGTGTGGTATTTGGTGCAACACTCTTTAGTCAGCTTTAA
AAAAATTGTCGATTATTTTGGTAACTGCGAAAAAGCAGTCCAACCAGTTAATTTGGCACAGTGGTCAAATCTTAGTTTAC
ATGCTAATCATTTAAAACGTGTAGCTGAATTTCAAACCGCTCAAGGTCAAGCTCAGTTTGAAAAACTGATTCAACAGATT
CATCAACATACTGACTTTATTTTAACGGCAGATGACTCAGGCTATCCCACTCAATTATTACCTTATACTGATCACCCACC
TATCATTTTTGGAAAAGGTCAGGCACAAACCCTATTGCAACCACAAATTGCGATTGTCGGTAGTCGAAAACCAAGCCCGC
ATGGTCGTCAAGTTGCTTATGATTTTGCCTACTACTTAAGTGAAAAAGGATTTTATGTAAGTAGTGGCTTGGCATATGGT
ATTGATGAAGCTGCTCATCAAGGTGCTTCAGTACATCAACGCACAATTGCTGTCACAGGAACAGGTCTAGACAGTACCTA
TCCTGCTCAGAATAAAAAACTTGCAGAACATATCTTGGCTCAAAACGGCGCCATTATTACTGAGTTTTTGCCTGGAACAC
CTCCATTACAACAGCATTTCCCACGTAGAAACCGAATTGTCAGCGGTCTGAGTTTAGGAGTACTCGTCGTAGAAGCGACG
TTAAAAAGTGGCTCTCTCATCACTGCGAACAAAGCTGCCGAACAAGGTAAAACTGTATTTGCCATCCCTGGTCATATTTA
CAGTGAGTTTCATCAAGGTTGCCATCAACTTATTCGTGAGGGAGCAATTTTAGTCGATCATCCTGAACAGATTATTGAAG
ACCTTGCTTTACCAACTCAGTGGCAAAGTCAGCAACAAAACTCCACCGAGGAGGCTGTAGTTTCTAATACCCCAGAAATT
CCTGAGCATTTAATTAACCTTTATCAATCTTTAGACTGGGTCGGACAAGATATTGACCAGCTTGTTTTGCATCACTCTCA
ACCTGTTGCAGAACTCACCTCTTCACTGATGGAACTAGAACTACTTGGTTTATGTATGCAACAATCAGGATTGTATTTAC
GTTGTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

91.512

100

0.915

  dprA Acinetobacter baumannii strain A118

91.247

100

0.912

  dprA Acinetobacter baylyi ADP1

71.129

100

0.719

  dprA Vibrio cholerae strain A1552

42.943

88.329

0.379