Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6L84_RS07580 Genome accession   NZ_CP077224
Coordinates   1550491..1550982 (-) Length   163 a.a.
NCBI ID   WP_012130902.1    Uniprot ID   A0AAP2K452
Organism   Streptococcus gordonii strain FDAARGOS 1454     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1545491..1555982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L84_RS07550 (I6L84_07550) - 1546131..1546598 (+) 468 WP_045504434.1 hypothetical protein -
  I6L84_RS07555 (I6L84_07555) - 1546901..1547110 (-) 210 WP_045504435.1 DUF1648 domain-containing protein -
  I6L84_RS07560 (I6L84_07560) - 1547110..1548720 (-) 1611 WP_060553827.1 hypothetical protein -
  I6L84_RS07565 (I6L84_07565) - 1548647..1549360 (-) 714 WP_060553826.1 ABC transporter ATP-binding protein -
  I6L84_RS07570 (I6L84_07570) - 1549496..1550158 (-) 663 WP_081041939.1 TetR/AcrR family transcriptional regulator -
  I6L84_RS07575 (I6L84_07575) rpsR 1550213..1550452 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  I6L84_RS07580 (I6L84_07580) ssb 1550491..1550982 (-) 492 WP_012130902.1 single-stranded DNA-binding protein Machinery gene
  I6L84_RS07585 (I6L84_07585) rpsF 1550999..1551289 (-) 291 WP_002896497.1 30S ribosomal protein S6 -
  I6L84_RS07590 (I6L84_07590) folE 1551502..1552065 (+) 564 WP_045634139.1 GTP cyclohydrolase I FolE -
  I6L84_RS07595 (I6L84_07595) - 1552113..1552934 (+) 822 WP_060553824.1 PrsW family intramembrane metalloprotease -
  I6L84_RS07600 (I6L84_07600) - 1553028..1553786 (-) 759 WP_060553823.1 epoxyqueuosine reductase QueH -
  I6L84_RS07605 (I6L84_07605) groL 1553923..1555545 (-) 1623 WP_060553822.1 chaperonin GroEL -
  I6L84_RS07610 (I6L84_07610) groES 1555568..1555849 (-) 282 WP_045504448.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18152.89 Da        Isoelectric Point: 5.2060

>NTDB_id=580034 I6L84_RS07580 WP_012130902.1 1550491..1550982(-) (ssb) [Streptococcus gordonii strain FDAARGOS 1454]
MINNVVLVGRMTRDAELRYTPQNQAVATFTLAVNRNFKNHNGEREADFINVVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVADNFQLLESRTSREGQSGGYTPNNFGGNAAPSFGGADSSHQVPNFSRDENPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=580034 I6L84_RS07580 WP_012130902.1 1550491..1550982(-) (ssb) [Streptococcus gordonii strain FDAARGOS 1454]
ATGATAAATAACGTTGTACTTGTAGGTCGCATGACCCGCGATGCTGAACTACGCTATACACCGCAAAACCAAGCGGTTGC
AACATTTACATTAGCTGTTAATCGTAATTTTAAAAACCATAATGGTGAAAGAGAAGCAGACTTTATCAATGTTGTCATCT
GGCGTCAGCAGGCAGAAAATCTTGCAAACTGGGCTAAAAAAGGTGCTCTAGTCGGAATTACAGGTCGTATTCAGACTCGT
AATTATGAAAATCAGCAAGGTCAACGTGTCTACGTCACTGAGGTCGTTGCAGATAACTTCCAACTATTGGAAAGTCGTAC
AAGCCGTGAAGGACAGTCTGGAGGTTATACTCCAAATAACTTTGGCGGTAATGCAGCACCAAGCTTCGGAGGCGCTGACT
CGTCTCACCAAGTACCGAATTTTTCTCGTGATGAGAATCCATTTGGTAACTCAAATCCAATGGATATCTCAGATGATGAT
CTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60

100

0.626
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.977

100

0.601
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368
  ssbB Streptococcus sobrinus strain NIDR 6715-7

54.128

66.871

0.362