Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6L47_RS16270 Genome accession   NZ_CP077221
Coordinates   3531571..3532158 (-) Length   195 a.a.
NCBI ID   WP_005340181.1    Uniprot ID   A0A165S798
Organism   Aeromonas sp. FDAARGOS 1417     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3526571..3537158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L47_RS16250 (I6L47_16250) cspA 3527880..3528092 (-) 213 WP_005316548.1 RNA chaperone/antiterminator CspA -
  I6L47_RS16255 (I6L47_16255) yjbD 3528686..3528970 (-) 285 WP_005340165.1 DUF3811 domain-containing protein -
  I6L47_RS16260 (I6L47_16260) - 3529117..3530019 (-) 903 WP_108613315.1 cation diffusion facilitator family transporter -
  I6L47_RS22620 - 3530480..3530605 (+) 126 WP_019445191.1 hypothetical protein -
  I6L47_RS16265 (I6L47_16265) - 3530678..3531421 (-) 744 WP_254204870.1 ABC transporter substrate-binding protein -
  I6L47_RS16270 (I6L47_16270) ssb 3531571..3532158 (-) 588 WP_005340181.1 single-stranded DNA-binding protein Machinery gene
  I6L47_RS16275 (I6L47_16275) - 3532585..3533232 (+) 648 WP_019445193.1 LuxR C-terminal-related transcriptional regulator -
  I6L47_RS16280 (I6L47_16280) - 3533232..3533675 (+) 444 WP_216947885.1 curli production assembly/transport protein CsgE -
  I6L47_RS16285 (I6L47_16285) - 3533687..3534088 (+) 402 WP_019445195.1 curli assembly protein CsgF -
  I6L47_RS16290 (I6L47_16290) - 3534096..3534935 (+) 840 WP_005355003.1 CsgG/HfaB family protein -
  I6L47_RS16295 (I6L47_16295) - 3535123..3535644 (+) 522 WP_111901629.1 curlin -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21583.11 Da        Isoelectric Point: 5.9301

>NTDB_id=579956 I6L47_RS16270 WP_005340181.1 3531571..3532158(-) (ssb) [Aeromonas sp. FDAARGOS 1417]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGQGMGQNMGGQSQGNWGQPQQSMPAQQPMNQQRPAPAPQQ
NMQPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=579956 I6L47_RS16270 WP_005340181.1 3531571..3532158(-) (ssb) [Aeromonas sp. FDAARGOS 1417]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACTCTGGCTACCTCCGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGCACCG
AGTGGCATCGCGTCGTCTTCATGGGCAAGTTGGCCGAAGTGGCTGGCGAGTACCTGAAGAAGGGCTCCCAAGTCTATGTG
GAAGGCAAACTGCAAACCCGCAAATGGCAGGATCAGAGCGGCCAGGAGCGCTACACCACTGAAGTGCTGGTCGACAGCTT
TACTGGCGTGATGCAGATGCTGGGTGGTCGTCCGCAAGGCGGTCAGGGTATGGGCCAGAACATGGGTGGCCAATCCCAGG
GTAACTGGGGTCAGCCGCAGCAGAGCATGCCTGCCCAGCAGCCGATGAATCAGCAGCGCCCGGCGCCAGCTCCGCAGCAG
AATATGCAGCCGCAAGGCGGTTATGGCCGTCCTGCACAGCAGCCGCAATCTGCGCCGCCGGTATATAACGAGCCGCCGAT
GGATTTCGACGACGATATCCCCTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A165S798

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.347

100

0.708
  ssb Glaesserella parasuis strain SC1401

53.886

98.974

0.533
  ssb Neisseria meningitidis MC58

46.597

97.949

0.456
  ssb Neisseria gonorrhoeae MS11

46.842

97.436

0.456