Detailed information NTG0579949

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: I6L47_RS11470
• Genome accession: NZ_CP077221
• Coordinates: 2539962..2540834 (+)
• Length: 290 a.a.
• NCBI ID: WP_216947459.1
• Uniprot ID: -
• Organism: Aeromonas sp. FDAARGOS 1417
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2534962..2545834

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6L47_RS11450 (I6L47_11450)	nadC	2535027..2535902 (+)	876	WP_216947458.1	carboxylating nicotinate-nucleotide diphosphorylase	-
I6L47_RS11455 (I6L47_11455)	tapA	2536230..2536709 (+)	480	WP_216949346.1	type IVa pilus major pilin TapA	-
I6L47_RS11460 (I6L47_11460)	pilB	2536713..2538419 (+)	1707	WP_005336134.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
I6L47_RS11465 (I6L47_11465)	pilC	2538659..2539900 (+)	1242	WP_005336136.1	type II secretion system F family protein	Machinery gene
I6L47_RS11470 (I6L47_11470)	pilD	2539962..2540834 (+)	873	WP_216947459.1	A24 family peptidase	Machinery gene
I6L47_RS11475 (I6L47_11475)	coaE	2540848..2541462 (+)	615	WP_216947460.1	dephospho-CoA kinase	-
I6L47_RS11480 (I6L47_11480)	zapD	2541500..2542222 (+)	723	WP_216947461.1	cell division protein ZapD	-
I6L47_RS11485 (I6L47_11485)	yacG	2542232..2542426 (+)	195	WP_005336142.1	DNA gyrase inhibitor YacG	-
I6L47_RS11490 (I6L47_11490)	mutT	2542504..2542908 (-)	405	WP_019444787.1	8-oxo-dGTP diphosphatase MutT	-
I6L47_RS11495 (I6L47_11495)	secA	2542983..2545703 (-)	2721	WP_005336144.1	preprotein translocase subunit SecA	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32099.38 Da
• Isoelectric Point: 6.4788

>NTDB_id=579949 I6L47_RS11470 WP_216947459.1 2539962..2540834(+) (pilD) [Aeromonas sp. FDAARGOS 1417]
MTLLLELAHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFAPDEEATAPECYNLMVPRSACPHCGHA
ITALENIPLLSWIWLKGRCRDCQAPISARYPLVELLTALLSVAVAMVITPGWGTLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLASGFVPLADAVIGAIAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIILLLSSL
VGAVIGISLIALQKHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLSTLL

Nucleotide

• Length: 873 bp

>NTDB_id=579949 I6L47_RS11470 WP_216947459.1 2539962..2540834(+) (pilD) [Aeromonas sp. FDAARGOS 1417]
ATGACACTTCTTCTCGAGCTGGCTCACAGCTTGCCCTGGCTCTACTTCTCGCTGGTTTTTCTTTTCTCCCTGATGATCGG
CAGCTTCCTTAACGTAGTGATCCACCGCTTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAGTATCGCAGCTACTTCG
CCCCTGATGAGGAGGCCACTGCGCCAGAGTGCTACAACCTGATGGTGCCGCGCTCCGCATGCCCTCACTGTGGCCACGCC
ATCACTGCGCTGGAGAACATCCCGCTGTTGAGCTGGATCTGGCTCAAAGGGCGTTGCCGCGACTGTCAGGCCCCCATCTC
GGCCCGCTATCCACTGGTAGAGCTGCTGACAGCCCTGCTATCGGTGGCCGTTGCCATGGTCATAACGCCGGGCTGGGGGA
CGCTGGCCGCCCTGCTGCTGACCTGGGTGCTGGTCGCCCTTACCTTCATCGATCTCGACAAGATGTTGCTGCCCGACCAA
CTCACCCTGCCACTGCTGTGGGGCGGGCTGCTGTTCAACCTGGCAAGTGGCTTCGTGCCGCTGGCGGATGCCGTGATCGG
CGCCATAGCGGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTCACTGGCAAGGAGGGGATGGGCTATG
GCGACTTCAAGCTGCTAGCGGCGCTGGGCGCCTGGCTCGGTTGGCAGGCGCTGCCCATAATTCTGCTGCTCTCATCTCTG
GTCGGCGCCGTGATCGGCATCAGTCTGATCGCCTTGCAAAAACATCATCAGGGCAAGCCCATTCCCTTCGGCCCCTACCT
CGCCATCGCGGGCTGGATTGCGCTGCTATGGGGCGATACCATCACCCGCTGGTATCTCTCTACCCTGCTTTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (139-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.279	98.966	0.597
pilD	Vibrio campbellii strain DS40M4	55.401	98.966	0.548
pilD	Acinetobacter nosocomialis M2	53.047	96.207	0.51
pilD	Acinetobacter baumannii D1279779	52.688	96.207	0.507
pilD	Neisseria gonorrhoeae MS11	48.872	91.724	0.448