Detailed information NTG0579849

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: I6L49_RS17885
• Genome accession: NZ_CP077209
• Coordinates: 3906879..3907751 (-)
• Length: 290 a.a.
• NCBI ID: WP_216950046.1
• Uniprot ID: -
• Organism: Aeromonas sp. FDAARGOS 1419
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3901879..3912751

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6L49_RS17860 (I6L49_17860)	secA	3902010..3904730 (+)	2721	WP_005336144.1	preprotein translocase subunit SecA	-
I6L49_RS17865 (I6L49_17865)	mutT	3904805..3905209 (+)	405	WP_042053534.1	8-oxo-dGTP diphosphatase MutT	-
I6L49_RS17870 (I6L49_17870)	yacG	3905287..3905481 (-)	195	WP_216950045.1	DNA gyrase inhibitor YacG	-
I6L49_RS17875 (I6L49_17875)	zapD	3905491..3906213 (-)	723	WP_005336141.1	cell division protein ZapD	-
I6L49_RS17880 (I6L49_17880)	coaE	3906251..3906865 (-)	615	WP_019444785.1	dephospho-CoA kinase	-
I6L49_RS17885 (I6L49_17885)	pilD	3906879..3907751 (-)	873	WP_216950046.1	A24 family peptidase	Machinery gene
I6L49_RS17890 (I6L49_17890)	pilC	3907813..3909054 (-)	1242	WP_005336136.1	type II secretion system F family protein	Machinery gene
I6L49_RS17895 (I6L49_17895)	pilB	3909295..3911001 (-)	1707	WP_005356616.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
I6L49_RS17900 (I6L49_17900)	-	3911004..3911447 (-)	444	WP_216950047.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
I6L49_RS17905 (I6L49_17905)	nadC	3911763..3912626 (-)	864	WP_216950048.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32156.44 Da
• Isoelectric Point: 6.7414

>NTDB_id=579849 I6L49_RS17885 WP_216950046.1 3906879..3907751(-) (pilD) [Aeromonas sp. FDAARGOS 1419]
MTLLLELAHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQGEYRSYFAPDEEATAPERYNLMVPRSACPHCGHT
ITALENIPLLSWLWLKGRCRDCQAPISARYPLVELLTALLSVAVAMVITPGWGTLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIILLLSSL
VGAVIGISLIALQKHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLSTLL

Nucleotide

• Length: 873 bp

>NTDB_id=579849 I6L49_RS17885 WP_216950046.1 3906879..3907751(-) (pilD) [Aeromonas sp. FDAARGOS 1419]
ATGACACTTCTTCTCGAGCTGGCTCACAGCTTGCCCTGGCTCTACTTTTCGCTGGTTTTTCTCTTCTCCCTGATGATCGG
CAGCTTCCTTAACGTGGTCATCCACCGCTTGCCCATCATGTTGGAGCGGGAGTGGCAAGGGGAGTACCGCAGCTACTTCG
CTCCCGATGAGGAGGCCACTGCGCCAGAGCGCTACAACCTGATGGTGCCGCGCTCCGCATGCCCTCACTGTGGCCACACC
ATCACTGCGCTGGAGAACATCCCGCTGCTGAGCTGGCTCTGGCTCAAAGGGCGTTGCCGCGACTGTCAGGCGCCCATCTC
GGCCCGCTATCCGCTGGTAGAGCTGCTGACAGCCCTGCTCTCGGTGGCCGTAGCAATGGTCATAACCCCGGGCTGGGGCA
CGCTAGCCGCCCTGCTGCTGACCTGGGTGCTGGTCGCCCTCACCTTTATCGATCTCGACAAGATGTTGCTGCCCGACCAG
CTCACCCTGCCACTGCTGTGGGGCGGGCTGCTGTTCAACCTGGCAGGCGGCTTCGTGCCGCTGGCGGATGCCGTGATCGG
CGCCATGGCGGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCTTTCAAGTTGCTCACTGGCAAGGAGGGGATGGGCTATG
GCGACTTCAAGCTGCTGGCGGCGCTGGGCGCCTGGCTCGGTTGGCAAGCACTGCCCATTATTTTGCTGCTCTCATCCCTG
GTCGGCGCCGTGATCGGCATCAGTCTGATCGCCTTGCAAAAACATCATCAGGGCAAGCCCATCCCCTTCGGCCCCTACCT
CGCCATCGCGGGCTGGATTGCGCTGCTATGGGGCGATACCATCACCCGCTGGTATCTCTCTACCCTGCTTTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.49	98.621	0.597
pilD	Vibrio campbellii strain DS40M4	56.446	98.966	0.559
pilD	Acinetobacter baumannii D1279779	53.597	95.862	0.514
pilD	Acinetobacter nosocomialis M2	53.597	95.862	0.514
pilD	Neisseria gonorrhoeae MS11	50.186	92.759	0.466