Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   I6L28_RS04755 Genome accession   NZ_CP077205
Coordinates   996738..997517 (+) Length   259 a.a.
NCBI ID   WP_216946988.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS 1398     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 991738..1002517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L28_RS04740 (I6L28_04740) ponA 992318..994879 (-) 2562 WP_031949514.1 penicillin-binding protein PBP1a -
  I6L28_RS04745 (I6L28_04745) pilM 995042..996100 (+) 1059 WP_016143662.1 pilus assembly protein PilM Machinery gene
  I6L28_RS04750 (I6L28_04750) pilN 996100..996741 (+) 642 WP_016143661.1 PilN domain-containing protein Machinery gene
  I6L28_RS04755 (I6L28_04755) pilO 996738..997517 (+) 780 WP_216946988.1 type 4a pilus biogenesis protein PilO Machinery gene
  I6L28_RS04760 (I6L28_04760) pilP 997529..998056 (+) 528 WP_016143659.1 pilus assembly protein PilP Machinery gene
  I6L28_RS04765 (I6L28_04765) pilQ 998119..1000284 (+) 2166 WP_016143658.1 type IV pilus secretin PilQ Machinery gene
  I6L28_RS04770 (I6L28_04770) aroK 1000296..1000865 (+) 570 WP_016142884.1 shikimate kinase AroK -
  I6L28_RS04775 (I6L28_04775) aroB 1000894..1001976 (+) 1083 WP_216946989.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29358.47 Da        Isoelectric Point: 6.0348

>NTDB_id=579778 I6L28_RS04755 WP_216946988.1 996738..997517(+) (pilO) [Acinetobacter pittii strain FDAARGOS 1398]
MSPHELHELSLEQAPSKKKKITLEKFLQQFNTLDMNSYGSWPLSVKITCWIFIFFAVLALGYFVAIQPKLQAIDNVQAQE
SNLLNEFREKDSKLRNLQQYQLQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
ITIEATGDYHAFGAFVSSIAALPRIVTMHDFVVEAAPVKDSKSDIPVLNYSIKAKTYRYMGAVENQNSGDPQVINGETQA
NASDGHNVNIPSIKKSKRK

Nucleotide


Download         Length: 780 bp        

>NTDB_id=579778 I6L28_RS04755 WP_216946988.1 996738..997517(+) (pilO) [Acinetobacter pittii strain FDAARGOS 1398]
ATGAGTCCTCATGAACTTCATGAGCTGTCTTTAGAACAAGCTCCATCTAAGAAAAAAAAGATCACTTTAGAAAAATTTCT
TCAGCAATTTAATACACTCGATATGAACAGCTATGGCAGTTGGCCATTATCTGTGAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTATTGGCCTTGGGCTATTTTGTTGCTATTCAGCCAAAGCTACAAGCAATTGATAATGTTCAGGCACAAGAA
AGTAATTTATTAAATGAGTTTCGAGAAAAAGACTCAAAATTACGCAACTTGCAGCAATATCAGCTTCAACTTCAAGAAAT
GCAAGCCAACTTCAATCAGCAGTTAGAACAATTGCCAAAAGAAACCGAAATTCCAAGTTTAGTTGAAGATATTAACTTAA
CGGGAGTGAATTCTGGTCTGAAGTTTAAAAATATCCGTTTAGAAGATGAAGTGAAGCAGGAAATTTTTATTGAACAGCCG
ATTACGATTGAGGCGACTGGGGATTATCACGCTTTCGGTGCTTTCGTGAGCAGTATTGCGGCATTACCGCGTATTGTGAC
GATGCATGATTTTGTTGTTGAAGCTGCTCCTGTTAAAGATAGTAAATCAGATATTCCTGTGCTTAATTATTCTATCAAAG
CAAAAACTTATCGCTATATGGGCGCAGTTGAAAACCAAAATAGTGGTGATCCTCAAGTGATAAATGGTGAGACTCAAGCC
AACGCCTCCGATGGTCATAATGTAAATATTCCTTCTATAAAGAAATCAAAGCGGAAGTAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

88.839

86.486

0.768
  comO Acinetobacter baylyi ADP1

68.98

94.595

0.653