Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   I6L28_RS04750 Genome accession   NZ_CP077205
Coordinates   996100..996741 (+) Length   213 a.a.
NCBI ID   WP_016143661.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS 1398     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 991100..1001741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L28_RS04730 (I6L28_04730) - 991143..991475 (+) 333 WP_216946986.1 DUF7709 family protein -
  I6L28_RS04735 (I6L28_04735) rrmA 991478..992302 (+) 825 WP_216946987.1 putative RNA methyltransferase -
  I6L28_RS04740 (I6L28_04740) ponA 992318..994879 (-) 2562 WP_031949514.1 penicillin-binding protein PBP1a -
  I6L28_RS04745 (I6L28_04745) pilM 995042..996100 (+) 1059 WP_016143662.1 pilus assembly protein PilM Machinery gene
  I6L28_RS04750 (I6L28_04750) pilN 996100..996741 (+) 642 WP_016143661.1 PilN domain-containing protein Machinery gene
  I6L28_RS04755 (I6L28_04755) pilO 996738..997517 (+) 780 WP_216946988.1 type 4a pilus biogenesis protein PilO Machinery gene
  I6L28_RS04760 (I6L28_04760) pilP 997529..998056 (+) 528 WP_016143659.1 pilus assembly protein PilP Machinery gene
  I6L28_RS04765 (I6L28_04765) pilQ 998119..1000284 (+) 2166 WP_016143658.1 type IV pilus secretin PilQ Machinery gene
  I6L28_RS04770 (I6L28_04770) aroK 1000296..1000865 (+) 570 WP_016142884.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23951.38 Da        Isoelectric Point: 5.4186

>NTDB_id=579777 I6L28_RS04750 WP_016143661.1 996100..996741(+) (pilN) [Acinetobacter pittii strain FDAARGOS 1398]
MATINLLPWRDGLREQRKKQFIILCFGVVVLGITTVFSGWFYLNQKLSDQEQANQLIISTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
TEEKKDKAVSSLLPRVEDSYGSFVVTVDVGEMGVTTTDDTANTSVGTDKEVAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=579777 I6L28_RS04750 WP_016143661.1 996100..996741(+) (pilN) [Acinetobacter pittii strain FDAARGOS 1398]
ATGGCAACAATTAATTTACTCCCTTGGCGTGATGGGCTTCGGGAGCAGCGCAAAAAACAATTTATTATTTTATGTTTTGG
GGTCGTTGTTTTGGGGATAACCACTGTATTTTCTGGGTGGTTTTATTTGAATCAAAAACTCAGTGATCAAGAACAAGCGA
ATCAACTCATTATCAGTACAAACCAGAATCTAGATCAACAGCTTAAAACCTTAAATGGCTTGCAAGAACAGCGTGACGCA
ATTATTGAGCGTATGAAGCTCATCCAAGGATTACAAAGTCAGCGTCCAGTCGTTGTACGTTTGGTGGATGAATTGGTACG
CGTGACTCCAGCAGCCATGTATTTGACTAAATTCAGCCGAACTGGAGATAAATTTACCATTGAAGGTAAAGCGGAAAGTC
CAAATACAGTTGCAGAGTTATTACGTAATCTCGAAGCATCACCATGGTATCGCAACGCTTTTATGAATTCTTTCTTAGCG
ACTGAAGAGAAAAAAGATAAGGCTGTAAGTTCTTTGCTTCCTCGAGTAGAAGATAGCTATGGCAGTTTTGTTGTTACTGT
TGATGTAGGGGAAATGGGAGTGACTACAACAGATGATACCGCCAATACGTCTGTAGGTACGGATAAGGAGGTAGCAAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

89.202

100

0.892
  comN Acinetobacter baylyi ADP1

71.569

95.775

0.685