Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   I6L28_RS04760 Genome accession   NZ_CP077205
Coordinates   997529..998056 (+) Length   175 a.a.
NCBI ID   WP_016143659.1    Uniprot ID   R8YYN9
Organism   Acinetobacter pittii strain FDAARGOS 1398     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 992529..1003056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L28_RS04745 (I6L28_04745) pilM 995042..996100 (+) 1059 WP_016143662.1 pilus assembly protein PilM Machinery gene
  I6L28_RS04750 (I6L28_04750) pilN 996100..996741 (+) 642 WP_016143661.1 PilN domain-containing protein Machinery gene
  I6L28_RS04755 (I6L28_04755) pilO 996738..997517 (+) 780 WP_216946988.1 type 4a pilus biogenesis protein PilO Machinery gene
  I6L28_RS04760 (I6L28_04760) pilP 997529..998056 (+) 528 WP_016143659.1 pilus assembly protein PilP Machinery gene
  I6L28_RS04765 (I6L28_04765) pilQ 998119..1000284 (+) 2166 WP_016143658.1 type IV pilus secretin PilQ Machinery gene
  I6L28_RS04770 (I6L28_04770) aroK 1000296..1000865 (+) 570 WP_016142884.1 shikimate kinase AroK -
  I6L28_RS04775 (I6L28_04775) aroB 1000894..1001976 (+) 1083 WP_216946989.1 3-dehydroquinate synthase -
  I6L28_RS04780 (I6L28_04780) - 1001993..1002874 (+) 882 WP_216946990.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19275.43 Da        Isoelectric Point: 9.7301

>NTDB_id=579779 I6L28_RS04760 WP_016143659.1 997529..998056(+) (pilP) [Acinetobacter pittii strain FDAARGOS 1398]
MKLKKILLSLGVGLVLVGCDSRIDAVNQQMADIRNQPPQAIEPAPVFTPVPQFNYAAHQLKSPFLPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALESLNMKGSMRNNRGQVMALIQTPDHQIERVQVGNYIGMNQGRITHIGPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=579779 I6L28_RS04760 WP_016143659.1 997529..998056(+) (pilP) [Acinetobacter pittii strain FDAARGOS 1398]
ATGAAACTAAAGAAAATTTTACTTTCTCTTGGGGTGGGCTTGGTTTTAGTCGGATGTGACTCGAGAATTGATGCCGTAAA
TCAGCAAATGGCCGACATACGTAATCAGCCTCCACAAGCTATAGAGCCAGCACCTGTTTTTACACCTGTCCCACAGTTTA
ATTATGCAGCCCATCAGTTAAAGAGCCCATTTTTGCCGAGCTCGCTTGCTGCTGAGCTCAAAATTATGGCGGGAAAACGG
GTATATCCGAATTTCTCACGAGCACCTCAACCTCTCGAAAGCTATGCATTAGAATCCTTAAATATGAAAGGCAGCATGCG
TAACAACCGCGGGCAAGTCATGGCTCTGATTCAAACACCTGATCATCAAATTGAGCGAGTACAGGTCGGGAACTATATCG
GGATGAATCAAGGTCGAATTACCCATATTGGTCCGACTCAGATTGATCTGGTGGAAATTGTTCCTGATGGACGAGAAGGC
TATGTGGAAAGACCAAGAACCTTGGTGTTGATTGGACCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8YYN9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

88

100

0.88
  comL Acinetobacter baylyi ADP1

73.964

96.571

0.714