Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6L28_RS04230 Genome accession   NZ_CP077205
Coordinates   899274..899861 (+) Length   195 a.a.
NCBI ID   WP_005066890.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS 1398     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 894274..904861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L28_RS04205 (I6L28_04205) - 894340..895152 (-) 813 WP_216946942.1 SDR family NAD(P)-dependent oxidoreductase -
  I6L28_RS04210 (I6L28_04210) - 895256..895627 (-) 372 WP_016143748.1 MerR family transcriptional regulator -
  I6L28_RS04215 (I6L28_04215) tenA 895692..896366 (-) 675 WP_057106279.1 thiaminase II -
  I6L28_RS04220 (I6L28_04220) - 896629..897711 (+) 1083 WP_031949587.1 DUF475 domain-containing protein -
  I6L28_RS04225 (I6L28_04225) yajR 897858..899222 (+) 1365 WP_216946943.1 MFS transporter -
  I6L28_RS04230 (I6L28_04230) ssb 899274..899861 (+) 588 WP_005066890.1 single-stranded DNA-binding protein Machinery gene
  I6L28_RS04235 (I6L28_04235) - 899902..900225 (-) 324 WP_016143744.1 AzlD domain-containing protein -
  I6L28_RS04240 (I6L28_04240) - 900222..900917 (-) 696 WP_216946944.1 AzlC family ABC transporter permease -
  I6L28_RS04245 (I6L28_04245) ydcN 900986..901534 (+) 549 WP_002117406.1 helix-turn-helix domain-containing protein -
  I6L28_RS04250 (I6L28_04250) - 901840..903282 (+) 1443 WP_081172591.1 amino acid permease -
  I6L28_RS04255 (I6L28_04255) - 903346..904845 (-) 1500 WP_216946945.1 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21223.01 Da        Isoelectric Point: 6.4822

>NTDB_id=579775 I6L28_RS04230 WP_005066890.1 899274..899861(+) (ssb) [Acinetobacter pittii strain FDAARGOS 1398]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYGQNSGGYGNQG
GFGNGGSNPQAGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=579775 I6L28_RS04230 WP_005066890.1 899274..899861(+) (ssb) [Acinetobacter pittii strain FDAARGOS 1398]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAATTTTCAATCGCGACAAGTGAAGCTTGGACTGATAAAAATACCGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTATTGCATAACCGTTTAGGGGAAATTGCTCAGCAATTCTTGCGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCATTACGTACACGTCAGTGGACAGACCAAAATGGCCAAGAGCGTTATACAACAGAAATCCGTGGCGATCAGATGCAGAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTCGCTGGCGGTAATGATTTTAATCAACCACGTTTTAACGCACCTCAAC
AGGGTGGTAATGGTTATCAAAATAATAACAACCAAGGTGGCGGCTACGGTCAAAACAGTGGTGGTTATGGTAACCAAGGT
GGTTTCGGCAATGGTGGAAGCAACCCTCAAGCGGGTGGTTTTGCGCCTAAAGCTCCGCAACAACCAGCTTCTGCACCAGC
TGATTTAGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.475

100

0.544
  ssb Vibrio cholerae strain A1552

44.5

100

0.456
  ssb Neisseria meningitidis MC58

39.394

100

0.4
  ssb Neisseria gonorrhoeae MS11

37.879

100

0.385