Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   I6L28_RS02170 Genome accession   NZ_CP077205
Coordinates   456675..457808 (+) Length   377 a.a.
NCBI ID   WP_216946782.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS 1398     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 451675..462808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L28_RS02145 (I6L28_02145) - 451931..452137 (-) 207 WP_031947118.1 hypothetical protein -
  I6L28_RS02150 (I6L28_02150) oprC 452191..454305 (-) 2115 WP_216946779.1 TonB-dependent copper receptor -
  I6L28_RS02155 (I6L28_02155) - 454378..454803 (-) 426 WP_216946780.1 DUF2946 family protein -
  I6L28_RS02160 (I6L28_02160) def 454847..455377 (-) 531 WP_016144059.1 peptide deformylase -
  I6L28_RS02165 (I6L28_02165) tsaP 455500..456654 (+) 1155 WP_216946781.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  I6L28_RS02170 (I6L28_02170) dprA 456675..457808 (+) 1134 WP_216946782.1 DNA-processing protein DprA Machinery gene
  I6L28_RS02175 (I6L28_02175) yrdC 457860..458429 (+) 570 WP_016144056.1 L-threonylcarbamoyladenylate synthase -
  I6L28_RS02180 (I6L28_02180) - 458821..459741 (-) 921 WP_079748210.1 DMT family transporter -
  I6L28_RS02185 (I6L28_02185) - 459846..460499 (-) 654 WP_080648756.1 TetR/AcrR family transcriptional regulator -
  I6L28_RS02190 (I6L28_02190) nepI 460635..461849 (+) 1215 WP_216946783.1 MFS transporter -
  I6L28_RS02195 (I6L28_02195) - 461871..462635 (+) 765 WP_216946784.1 AraC family transcriptional regulator -

Sequence


Protein


Download         Length: 377 a.a.        Molecular weight: 41782.35 Da        Isoelectric Point: 6.5813

>NTDB_id=579772 I6L28_RS02170 WP_216946782.1 456675..457808(+) (dprA) [Acinetobacter pittii strain FDAARGOS 1398]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIVDYFGNCEKAVQSVNLAQWSNLGLHANHLKRVAEFQTAQGQAQFEKLIQQI
HQHTDFILTVDDSGYPTQLLPYTDHPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFYVSSGLAYG
IDEAAHQGASVHQRTIAVTGTGLDSTYPAQNKKLAEQILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILVDHPEQIIEDLALPTQWQSQQQGSTEEAIVSSTSEI
PEHLVNLYQSLDWVGQDIDQLVLHHSQPVAELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=579772 I6L28_RS02170 WP_216946782.1 456675..457808(+) (dprA) [Acinetobacter pittii strain FDAARGOS 1398]
ATGCTTACTCAACTTTCTTCACACCATTACCACACGCTTAAAGTGTGGTATTTGGTGCAACACTCTTTAGTCAGCTTTAA
AAAAATTGTCGATTATTTTGGTAACTGCGAAAAAGCAGTCCAATCAGTTAATTTGGCACAGTGGTCAAATCTTGGTTTAC
ATGCTAATCATTTAAAACGTGTAGCTGAATTTCAAACTGCTCAAGGTCAAGCTCAGTTTGAAAAACTGATTCAGCAGATC
CATCAGCATACTGACTTTATTTTAACTGTAGATGACTCAGGCTATCCCACTCAGTTATTACCTTATACAGATCACCCACC
TATCATTTTTGGAAAAGGTCAGGCACAAGCCTTATTACAACCACAAATTGCGATTGTGGGTAGTCGAAAACCAAGCCCGC
ATGGTCGTCAGGTTGCTTATGATTTTGCCTACTACTTAAGTGAAAAAGGATTTTATGTAAGTAGTGGCTTGGCATATGGG
ATTGACGAAGCTGCTCATCAAGGTGCTTCAGTACATCAACGCACAATTGCTGTCACAGGAACTGGTTTAGACAGTACCTA
TCCTGCTCAGAATAAAAAACTTGCAGAACAGATCTTGGCTCAAAACGGCGCGATTATTACTGAGTTTTTGCCTGGAACAC
CTCCATTACAACAGCATTTCCCACGTAGAAACCGAATTGTCAGCGGTCTGAGTTTAGGAGTACTCGTCGTAGAAGCGACG
TTAAAAAGTGGCTCTCTCATCACTGCGAACAAAGCTGCCGAACAAGGTAAAACAGTATTTGCTATTCCTGGTCATATTTA
CAGTGAGTTTCATCAAGGTTGCCATCAACTCATTCGTGAGGGAGCAATTTTAGTCGATCATCCTGAACAGATTATTGAAG
ACCTTGCTTTACCTACCCAATGGCAAAGTCAGCAACAAGGCTCAACTGAGGAAGCAATAGTTTCTAGTACCTCAGAAATT
CCTGAGCATTTAGTTAATCTTTATCAGTCTTTAGATTGGGTTGGACAAGATATTGACCAGCTTGTTTTGCATCACTCTCA
ACCTGTGGCAGAACTCACCTCTTCACTGATGGAACTAGAACTACTCGGCTTATGTATGCAACAATCAGGGTTGTATTTAC
GTTGTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

90.716

100

0.907

  dprA Acinetobacter baumannii strain A118

90.186

100

0.902

  dprA Acinetobacter baylyi ADP1

70.866

100

0.716

  dprA Vibrio cholerae strain A1552

43.529

90.186

0.393

  dprA Vibrio campbellii strain DS40M4

40.882

90.186

0.369