Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6L32_RS08915 Genome accession   NZ_CP077201
Coordinates   1860116..1860685 (-) Length   189 a.a.
NCBI ID   WP_010674212.1    Uniprot ID   A0A081LN46
Organism   Aeromonas sp. FDAARGOS 1402     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1855116..1865685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L32_RS08890 (I6L32_08890) - 1855539..1856261 (+) 723 WP_010675899.1 response regulator -
  I6L32_RS08895 (I6L32_08895) - 1856269..1857654 (+) 1386 WP_216944969.1 ATP-binding protein -
  I6L32_RS08900 (I6L32_08900) - 1857831..1858043 (-) 213 WP_042078672.1 RNA chaperone/antiterminator CspA -
  I6L32_RS08905 (I6L32_08905) yjbD 1858435..1858719 (-) 285 WP_042879473.1 DUF3811 domain-containing protein -
  I6L32_RS23510 - 1859015..1859137 (+) 123 WP_010675895.1 hypothetical protein -
  I6L32_RS08910 (I6L32_08910) - 1859184..1859954 (-) 771 WP_201927675.1 ABC transporter substrate-binding protein -
  I6L32_RS08915 (I6L32_08915) ssb 1860116..1860685 (-) 570 WP_010674212.1 single-stranded DNA-binding protein Machinery gene
  I6L32_RS08920 (I6L32_08920) - 1861203..1861841 (+) 639 WP_080944112.1 LuxR C-terminal-related transcriptional regulator -
  I6L32_RS08925 (I6L32_08925) uvrA 1861934..1864762 (+) 2829 WP_039040117.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 20813.18 Da        Isoelectric Point: 5.9247

>NTDB_id=579746 I6L32_RS08915 WP_010674212.1 1860116..1860685(-) (ssb) [Aeromonas sp. FDAARGOS 1402]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSDTWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGGQGMGGQSSQGNWGQPQQAAPQQNMQRPAAPQQNMQPQG
GYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=579746 I6L32_RS08915 WP_010674212.1 1860116..1860685(-) (ssb) [Aeromonas sp. FDAARGOS 1402]
ATGGCCAGTCGAGGCATCAACAAAGTCATTCTGATCGGTAACCTGGGGCAAGACCCGGAAGTGCGCTACATGCCGAGCGG
CGGTGCCGTGACTAACATCACCCTGGCCACCTCCGATACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGCACCG
AATGGCACCGTGTCGTCTTCATGGGCAAGCTGGCCGAAGTGGCCGGCGAGTACCTGAAGAAGGGCTCCCAGGTCTATGTG
GAAGGCAAACTCCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGAGCGCTACACCACCGAGGTGCTGGTCGACAGCTT
CACCGGTGTGATGCAGATGCTGGGTGGCCGTCCGCAGGGCGGTGGCCAGGGCATGGGCGGCCAGTCATCCCAGGGCAACT
GGGGCCAGCCGCAACAGGCTGCACCGCAACAGAACATGCAACGTCCTGCTGCCCCGCAGCAGAACATGCAACCGCAAGGC
GGTTACGGCCGTCCGGCCCAGCAGCCACAATCTGCCCCGCCGGTCTACAACGAACCGCCGATGGATTTCGACGACGATAT
TCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A081LN46

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

68.912

100

0.704
  ssb Glaesserella parasuis strain SC1401

54.011

98.942

0.534
  ssb Neisseria meningitidis MC58

47.34

99.471

0.471
  ssb Neisseria gonorrhoeae MS11

46.774

98.413

0.46