Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HU754_RS26965 Genome accession   NZ_CP077090
Coordinates   6123885..6124409 (-) Length   174 a.a.
NCBI ID   WP_008081898.1    Uniprot ID   J3IML3
Organism   Pseudomonas zeae strain OE 48.2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6118885..6129409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU754_RS26935 (HU754_026935) - 6119139..6119807 (+) 669 WP_186621718.1 YjfI family protein -
  HU754_RS26940 (HU754_026940) - 6119825..6120523 (+) 699 WP_186621716.1 PspA/IM30 family protein -
  HU754_RS26945 (HU754_026945) - 6120723..6121373 (+) 651 WP_095048833.1 DUF2491 family protein -
  HU754_RS26950 (HU754_026950) - 6121388..6121813 (+) 426 WP_007917221.1 DUF350 domain-containing protein -
  HU754_RS26955 (HU754_026955) - 6121831..6122526 (+) 696 WP_186621714.1 DUF1190 domain-containing protein -
  HU754_RS26960 (HU754_026960) - 6122529..6123686 (+) 1158 WP_186621712.1 glutathionylspermidine synthase family protein -
  HU754_RS26965 (HU754_026965) ssb 6123885..6124409 (-) 525 WP_008081898.1 single-stranded DNA-binding protein Machinery gene
  HU754_RS26970 (HU754_026970) - 6124419..6125816 (-) 1398 WP_186621710.1 MFS transporter -
  HU754_RS26975 (HU754_026975) uvrA 6126007..6128841 (+) 2835 WP_093434409.1 excinuclease ABC subunit UvrA -
  HU754_RS26980 (HU754_026980) bfr 6128906..6129373 (-) 468 WP_007918444.1 bacterioferritin -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19242.39 Da        Isoelectric Point: 5.9314

>NTDB_id=579063 HU754_RS26965 WP_008081898.1 6123885..6124409(-) (ssb) [Pseudomonas zeae strain OE 48.2]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQSAPAPRQQAPRPQQSAPQQRSAPAPQQAAPQ
PAPDFDSFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=579063 HU754_RS26965 WP_008081898.1 6123885..6124409(-) (ssb) [Pseudomonas zeae strain OE 48.2]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAATGGACCGACAAGCAAACCGGTCAGAAGGTCGAGAAGACCGAGT
GGCACCGTGTTTCGATGTTCGGCAAGGTTGCGGAAATCGCCGGCGAATACCTGCGTAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTCGGCGGCCGTCCACAACAGGGCGACCAACAAGGCGGTGGCAACAACTACCAGCAGTCGGCACCGGCAC
CACGCCAGCAAGCTCCACGTCCGCAGCAGTCGGCTCCACAGCAGCGTTCGGCCCCAGCTCCACAGCAGGCCGCACCGCAA
CCGGCTCCGGATTTCGACAGCTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J3IML3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.011

100

0.603
  ssb Glaesserella parasuis strain SC1401

48.352

100

0.506
  ssb Neisseria meningitidis MC58

47.222

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.295

100

0.489