Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HU749_RS26735 Genome accession   NZ_CP077086
Coordinates   6051874..6052395 (-) Length   173 a.a.
NCBI ID   WP_003206078.1    Uniprot ID   A0A0F4XIB0
Organism   Pseudomonas ogarae strain SWRI108     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6046874..6057395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU749_RS26725 (HU749_026725) - 6048799..6050724 (+) 1926 WP_079302794.1 MAC/perforin domain-containing protein -
  HU749_RS26730 (HU749_026730) - 6050894..6051748 (+) 855 WP_079302795.1 hypothetical protein -
  HU749_RS26735 (HU749_026735) ssb 6051874..6052395 (-) 522 WP_003206078.1 single-stranded DNA-binding protein Machinery gene
  HU749_RS26740 (HU749_026740) - 6052405..6053802 (-) 1398 WP_046064835.1 MFS transporter -
  HU749_RS26745 (HU749_026745) uvrA 6053982..6056816 (+) 2835 WP_014340469.1 excinuclease ABC subunit UvrA -
  HU749_RS26750 (HU749_026750) bfr 6056911..6057375 (-) 465 WP_014340470.1 bacterioferritin -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19281.47 Da        Isoelectric Point: 5.9455

>NTDB_id=578976 HU749_RS26735 WP_003206078.1 6051874..6052395(-) (ssb) [Pseudomonas ogarae strain SWRI108]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQQGGNNYQQSAPAPRQQAPRPQSAPQPQRERPAPQQAAPQP
APDFDSFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=578976 HU749_RS26735 WP_003206078.1 6051874..6052395(-) (ssb) [Pseudomonas ogarae strain SWRI108]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACTTGCGGCCAGGATCCCGAAGTTCGCTACTTGCCGAACGGCAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAGACCGAAT
GGCACCGCGTGTCGATGTTCGGCAAGGTGGCTGAGATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTGTACATCGAG
GGCAAGCTGCAGACTCGCGAGTGGGAAAAGGACGGTATCAAGCGTTACACCACCGAAATCGTGGTCGACATGCAAGGCAC
CATGCAATTGCTGGGTGGCCGTCCACAAGGCGACCAGCAGCAAGGTGGCAACAACTACCAGCAGTCGGCTCCGGCCCCGC
GTCAGCAGGCGCCTCGTCCGCAGTCCGCTCCACAGCCACAACGCGAACGCCCGGCCCCACAACAGGCCGCGCCGCAACCG
GCTCCGGATTTCGACAGCTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F4XIB0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.044

100

0.59
  ssb Neisseria gonorrhoeae MS11

47.568

100

0.509
  ssb Glaesserella parasuis strain SC1401

48.352

100

0.509
  ssb Neisseria meningitidis MC58

48.045

100

0.497