Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   KSS92_RS23615 Genome accession   NZ_CP077081
Coordinates   5350246..5351592 (+) Length   448 a.a.
NCBI ID   WP_217878840.1    Uniprot ID   -
Organism   Pseudomonas atacamensis strain SWRI76     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5345246..5356592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSS92_RS23590 (KSS92_23590) pgeF 5345460..5346182 (-) 723 WP_217878838.1 peptidoglycan editing factor PgeF -
  KSS92_RS23595 (KSS92_23595) rluD 5346179..5347141 (-) 963 WP_016773140.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KSS92_RS23600 (KSS92_23600) - 5347293..5348309 (+) 1017 WP_122506682.1 outer membrane protein assembly factor BamD -
  KSS92_RS23605 (KSS92_23605) - 5348437..5348670 (+) 234 WP_130902288.1 PP0621 family protein -
  KSS92_RS23610 (KSS92_23610) pilS 5348660..5350249 (+) 1590 WP_217878839.1 PAS domain-containing sensor histidine kinase Regulator
  KSS92_RS23615 (KSS92_23615) pilR 5350246..5351592 (+) 1347 WP_217878840.1 sigma-54 dependent transcriptional regulator Regulator
  KSS92_RS23620 (KSS92_23620) thiO 5351685..5352785 (-) 1101 WP_217878841.1 glycine oxidase ThiO -
  KSS92_RS23625 (KSS92_23625) - 5352843..5353244 (-) 402 WP_217878842.1 type IV pilin protein -
  KSS92_RS23630 (KSS92_23630) - 5353260..5356349 (-) 3090 WP_217878843.1 pilus assembly protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 50132.39 Da        Isoelectric Point: 6.3595

>NTDB_id=578847 KSS92_RS23615 WP_217878840.1 5350246..5351592(+) (pilR) [Pseudomonas atacamensis strain SWRI76]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLETFSARNLGEAQALLQREHFDLCLTDMRLPDGTGLELVQHIQQRAPHLP
VAMITAYGSLETAINALKAGAFDFLTKPVELPRLRELVSSALRLPTAGGLSTAIERRLLGDSPPMANLRRQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAHGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLEAEVSAERFRQDLYYRLNVIELRVPSLRERRDDIEALA
MHVLKRLANDTGQPEARLHPQALEALKNYRFPGNVRELENVLERAHTLCENRTIEAQDLRLSEGNCTADGAMADLTQVDN
LEDYLESVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=578847 KSS92_RS23615 WP_217878840.1 5350246..5351592(+) (pilR) [Pseudomonas atacamensis strain SWRI76]
TTGAATACAAGCCCACGGCAAAAAATTCTAATCGTCGACGACGAACCGGATATCCGCGAGCTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGAGACCTTCAGCGCACGCAATCTGGGCGAAGCTCAGGCGCTGTTGCAGCGCGAGCACTTTGACCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACCGGGCTGGAGCTGGTGCAACACATTCAGCAACGCGCTCCACACCTGCCG
GTGGCGATGATCACGGCGTACGGAAGCCTGGAAACTGCGATCAATGCGCTGAAGGCCGGGGCGTTCGACTTCCTCACCAA
ACCGGTGGAACTGCCGCGCTTGCGCGAACTGGTCAGCTCGGCGCTGCGCCTGCCGACAGCGGGCGGCTTGAGCACGGCAA
TCGAGCGACGCTTGCTGGGCGACTCGCCGCCGATGGCCAATCTGCGCAGGCAGATCGACAAGCTCGCACGCAGTCAGGCG
CCGGTGTACATCAGTGGTGAATCCGGCAGCGGCAAAGAACTGGTCGCGCGTCTGATCCACGAACAAGGTCCGCGCGCCAG
CCAGCCGTTTGTGCCGGTGAACTGCGGGGCAATTCCGTCAGAGCTGATGGAAAGCGAATTTTTCGGCCACCGCAAAGGCA
GTTTCACTGGAGCCGTTGAAGACAAGCCTGGGCTGTTTCAAGCGGCCCATGGCGGCACTCTGTTTCTCGATGAAGTCGCC
GACCTGCCACTATCGATGCAGGTGAAGCTGCTGCGGGCAATCCAGGAAAAAGCCGTGCGCAGTGTCGGCGGCCAGCAGGA
AACGGTGGTCGACGTACGCATCCTTTGTGCCACGCACAAAGACCTTGAAGCCGAAGTTTCGGCCGAACGCTTCCGCCAGG
ATCTGTATTACCGGCTCAACGTCATCGAACTGCGTGTGCCGTCCCTGCGCGAACGCCGTGACGACATTGAGGCGCTTGCC
ATGCACGTGCTCAAGCGCTTGGCCAACGACACCGGACAACCCGAAGCACGCCTGCATCCGCAAGCGCTGGAGGCGCTGAA
GAACTATCGCTTTCCCGGCAATGTGCGCGAACTGGAGAATGTTCTCGAACGCGCGCACACCCTGTGTGAAAACCGCACGA
TCGAAGCGCAGGATCTGCGTTTGAGCGAAGGCAATTGCACGGCGGACGGGGCGATGGCCGATCTGACGCAGGTCGACAAT
CTTGAGGATTATCTGGAGAGCGTCGAGAGGAAGCTGATTTTGCAGGCGCTGGAGGAAACCCGCTGGAACCGCACGGCGGC
GGCGCAGCGGTTGAGTCTGTCGTTCAGGTCGATGCGTTATCGGCTGAAGAAATTGGGCCTGGATTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-118)

Sigma-54 interaction domain (Sigma54_activat)

(139-304)

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

78.104

98.884

0.772
  pilR Acinetobacter baumannii strain A118

49.455

100

0.507
  luxO Vibrio cholerae strain A1552

40.098

91.295

0.366