Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   KSS92_RS23610 Genome accession   NZ_CP077081
Coordinates   5348660..5350249 (+) Length   529 a.a.
NCBI ID   WP_217878839.1    Uniprot ID   -
Organism   Pseudomonas atacamensis strain SWRI76     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5343660..5355249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSS92_RS23590 (KSS92_23590) pgeF 5345460..5346182 (-) 723 WP_217878838.1 peptidoglycan editing factor PgeF -
  KSS92_RS23595 (KSS92_23595) rluD 5346179..5347141 (-) 963 WP_016773140.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KSS92_RS23600 (KSS92_23600) - 5347293..5348309 (+) 1017 WP_122506682.1 outer membrane protein assembly factor BamD -
  KSS92_RS23605 (KSS92_23605) - 5348437..5348670 (+) 234 WP_130902288.1 PP0621 family protein -
  KSS92_RS23610 (KSS92_23610) pilS 5348660..5350249 (+) 1590 WP_217878839.1 PAS domain-containing sensor histidine kinase Regulator
  KSS92_RS23615 (KSS92_23615) pilR 5350246..5351592 (+) 1347 WP_217878840.1 sigma-54 dependent transcriptional regulator Regulator
  KSS92_RS23620 (KSS92_23620) thiO 5351685..5352785 (-) 1101 WP_217878841.1 glycine oxidase ThiO -
  KSS92_RS23625 (KSS92_23625) - 5352843..5353244 (-) 402 WP_217878842.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58706.50 Da        Isoelectric Point: 7.0024

>NTDB_id=578846 KSS92_RS23610 WP_217878839.1 5348660..5350249(+) (pilS) [Pseudomonas atacamensis strain SWRI76]
MVAEVANADQKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSANDDLLRGGSWLYLIINMLLVVFLENTRRPAQLF
TLAFVDVLLLCGLFYAAGGVASALGNLLVVSVAISNTLLRRRIGLLIAAIAAIGIVGLSFLLGLSRPLSANAYLQAGTLG
ALCFAASLLVQGLIRRLEVSETLAEQRASEVVSLEALNALILQRMRTGILVLDEQRRVQLANHSAQSLLGHSHLQGHLID
EYSPALVERLQLWRNNPTLRPQSLKIPGNGLELQPSFIALEQSPNQQTLVFLEDLAQITQQAQQLKLAALGRLTAGISHE
IRNPLGAISHAAQLLAESEELDSADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSALQRLDLKPWLEDFVGEIREQANER
QHIHLRINSGDFTTLMDPNQLRQILDNLIRNAWRHSAQMHEKADVWLALFVDPDSQLAVLEVQDNGPGVSAEEQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKSRQGGGCFCITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=578846 KSS92_RS23610 WP_217878839.1 5348660..5350249(+) (pilS) [Pseudomonas atacamensis strain SWRI76]
GTGGTCGCTGAGGTCGCCAACGCCGACCAGAAACAGGCGCAGCGTCTGCTGCGCCTTTATCACCTGTACCGTTTAAGTGT
CGGCATCACTCTGGTGCTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACGTCGGCCAACGACGACCTGCTGCGCG
GCGGCAGCTGGCTGTACCTGATCATCAATATGCTGCTGGTGGTGTTCCTCGAAAACACCCGGCGCCCGGCGCAGTTGTTC
ACCCTGGCCTTCGTCGACGTGCTGCTGTTGTGCGGCCTGTTCTACGCGGCGGGCGGCGTGGCCAGTGCGCTGGGCAATCT
GCTGGTGGTCTCGGTGGCAATCAGCAACACCCTGCTACGCCGACGCATCGGCCTGCTGATTGCCGCCATTGCGGCGATCG
GCATTGTCGGCCTGAGCTTTCTGCTGGGGCTCAGCCGCCCCTTGAGCGCCAACGCCTACTTGCAAGCCGGCACCCTCGGT
GCGCTGTGCTTTGCCGCCTCGCTGCTGGTGCAAGGGTTGATCCGCCGCCTCGAAGTCAGCGAGACCCTGGCCGAACAGCG
CGCCAGCGAAGTGGTCAGCCTGGAGGCGCTGAACGCGTTGATCCTGCAACGCATGCGCACGGGGATTCTGGTGCTCGACG
AGCAACGTCGGGTGCAACTGGCCAATCACAGCGCGCAGAGTCTGCTCGGCCATAGTCACCTGCAAGGTCATTTGATCGAC
GAATATTCGCCAGCACTGGTCGAGCGCCTGCAACTGTGGCGCAACAACCCGACCTTGCGCCCGCAGAGTCTGAAAATCCC
CGGCAATGGCCTTGAGCTGCAGCCCAGTTTCATCGCCCTTGAGCAGAGCCCGAACCAGCAGACGCTGGTGTTTCTCGAAG
ACCTGGCGCAAATCACCCAACAGGCGCAGCAACTCAAGCTCGCTGCGCTCGGGCGTTTGACCGCCGGCATCTCCCATGAA
ATTCGCAATCCACTGGGCGCGATCAGTCATGCCGCGCAGCTGTTGGCCGAGTCCGAGGAACTCGATAGCGCAGATCGGCG
TCTGACGCAGATTATTCAAGACCACTCCCAGCGCATGAACCGAGTCATCGAAAACGTCCTGCAACTGTCCCGCCGCCAGC
AAAGCGCACTGCAACGGCTGGACCTCAAGCCGTGGCTGGAAGACTTCGTCGGCGAAATCCGCGAGCAGGCCAATGAGCGC
CAGCACATTCATCTGCGGATCAATTCCGGCGATTTCACCACGCTGATGGACCCCAACCAATTGCGGCAGATTCTCGACAA
TCTGATACGCAACGCCTGGCGTCACAGTGCGCAAATGCACGAGAAGGCCGACGTCTGGCTGGCACTGTTCGTCGACCCGG
ACAGCCAGTTGGCGGTGCTTGAGGTCCAGGACAACGGCCCCGGCGTGTCGGCCGAGGAACAGGCGCATCTGTTTGAGCCG
TTTTTCACTACCAGCAGCCAGGGCACCGGTCTTGGCCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCACGCCT
AGACTTCAAATCACGCCAAGGCGGCGGCTGCTTTTGCATCACTTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.057

100

0.592