Detailed information NTG0578818

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: KSS97_RS24840
• Genome accession: NZ_CP077080
• Coordinates: 5566674..5568020 (+)
• Length: 448 a.a.
• NCBI ID: WP_030140271.1
• Uniprot ID: -
• Organism: Pseudomonas alvandae strain SWRI17
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5561674..5573020

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KSS97_RS24815 (KSS97_24815)	pgeF	5561890..5562615 (-)	726	WP_217860365.1	peptidoglycan editing factor PgeF	-
KSS97_RS24820 (KSS97_24820)	rluD	5562612..5563574 (-)	963	WP_030140267.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
KSS97_RS24825 (KSS97_24825)	-	5563726..5564742 (+)	1017	WP_030140268.1	outer membrane protein assembly factor BamD	-
KSS97_RS24830 (KSS97_24830)	-	5564865..5565098 (+)	234	WP_030140269.1	PP0621 family protein	-
KSS97_RS24835 (KSS97_24835)	pilS	5565088..5566677 (+)	1590	WP_198798123.1	nitrogen regulation protein NR(II)	Regulator
KSS97_RS24840 (KSS97_24840)	pilR	5566674..5568020 (+)	1347	WP_030140271.1	sigma-54 dependent transcriptional regulator	Regulator
KSS97_RS24845 (KSS97_24845)	-	5568412..5568555 (+)	144	WP_217860366.1	hypothetical protein	-
KSS97_RS24850 (KSS97_24850)	thiO	5568760..5569860 (-)	1101	WP_217860367.1	glycine oxidase ThiO	-
KSS97_RS24855 (KSS97_24855)	-	5569912..5570316 (-)	405	WP_198798121.1	type IV pilin protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 49976.40 Da
• Isoelectric Point: 6.3292

>NTDB_id=578818 KSS97_RS24840 WP_030140271.1 5566674..5568020(+) (pilR) [Pseudomonas alvandae strain SWRI17]
MNTRSRQRILIVDDEPDIRELLEITLGRMKLDTRSAKNLSEAQSLLAAEAFDLCLTDMRLPDGTGLELVKHIQQRYSQLP
VAMITAYGSLEVAIDALKAGAFDFLTKPVDLARLRELVGSALRLSPGTTPGATVERVLLGDSPPMRGVRKQIEKLARSQA
PVYISGESGCGKELVARLIHEQGPRASQPFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRAVGGQQEEVMDVRILCATHKDLDAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIEPLA
NYMLQRLAASTGNPAAKLHPAALDALRNYRFPGNVRELENMLERAYTLCEHHQIEADDLRLAESNVAGDVANPDLVRVDN
LEDYLEDVERKVILQALEETRWNRTAAAQRLKLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=578818 KSS97_RS24840 WP_030140271.1 5566674..5568020(+) (pilR) [Pseudomonas alvandae strain SWRI17]
TTGAATACACGCTCACGGCAACGAATCCTGATCGTCGATGACGAGCCGGACATCCGCGAACTCCTGGAGATCACCCTGGG
CAGGATGAAACTCGACACCCGCAGCGCCAAGAATCTCAGCGAGGCCCAATCCCTGCTGGCGGCCGAAGCCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGATGGCACGGGCCTGGAGCTGGTCAAACATATCCAGCAACGGTATTCCCAACTGCCC
GTGGCGATGATCACCGCCTATGGCAGCCTGGAAGTCGCCATCGATGCCCTCAAGGCAGGCGCCTTCGATTTCCTGACCAA
GCCAGTCGATCTAGCTCGCCTGCGGGAATTGGTCGGCAGCGCCCTGCGCCTGTCACCGGGCACCACGCCCGGCGCGACCG
TCGAACGCGTTCTACTGGGGGATTCGCCGCCGATGCGCGGCGTGCGCAAGCAAATCGAAAAACTGGCCCGAAGCCAGGCG
CCGGTCTATATCAGCGGCGAGTCGGGCTGTGGCAAGGAATTGGTCGCCCGCCTGATCCATGAACAAGGGCCGCGCGCCAG
CCAGCCTTTCGTGCCGGTCAACTGTGGGGCAATTCCCACTGAACTGATGGAAAGCGAGTTTTTCGGCCACCGCAAAGGCA
GCTTCAGCGGCGCCATCGAAGACAAACCCGGGTTGTTCCAGGCCGCCCACGGCGGGACGCTGTTCCTCGACGAAGTGGCC
GACCTGCCGCTGGCGATGCAGGTCAAGCTCTTGCGCGCCATCCAGGAAAAAGCCGTGCGCGCCGTCGGCGGCCAGCAGGA
AGAAGTGATGGACGTGCGAATTCTCTGCGCCACTCACAAAGACCTCGACGCCGAAGTCGCGGCCGGGCGCTTTCGCCAGG
ATCTGTATTACCGACTGAACGTCATTGAACTGCGCGTCCCGCCCCTGCGCGAACGTCGTGAAGATATCGAGCCGCTGGCC
AACTACATGCTCCAGCGCCTGGCCGCGAGCACCGGTAACCCGGCGGCGAAGCTGCATCCTGCGGCACTCGATGCCCTGCG
CAATTACCGCTTCCCCGGCAACGTGCGGGAGCTGGAGAACATGCTGGAACGGGCCTATACCCTTTGCGAACACCATCAGA
TCGAGGCCGATGACCTGCGCCTTGCCGAGAGCAACGTGGCTGGCGATGTGGCTAACCCGGATCTGGTGCGGGTCGACAAC
CTGGAGGATTACCTGGAAGACGTCGAACGCAAGGTTATCCTCCAGGCGCTTGAAGAGACCCGCTGGAATCGCACGGCGGC
GGCACAGCGGTTGAAGTTGTCGTTTCGGTCGATGCGGTATCGGTTGAAGAAGTTGGGGTTGGATTAG

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

• Response regulator receiver domain (Response_reg) (9-118)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	78.604	99.107	0.779
pilR	Acinetobacter baumannii strain A118	49.673	100	0.509
luxO	Vibrio cholerae strain A1552	36.569	98.884	0.362