Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   KSS97_RS24835 Genome accession   NZ_CP077080
Coordinates   5565088..5566677 (+) Length   529 a.a.
NCBI ID   WP_198798123.1    Uniprot ID   -
Organism   Pseudomonas alvandae strain SWRI17     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5560088..5571677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSS97_RS24815 (KSS97_24815) pgeF 5561890..5562615 (-) 726 WP_217860365.1 peptidoglycan editing factor PgeF -
  KSS97_RS24820 (KSS97_24820) rluD 5562612..5563574 (-) 963 WP_030140267.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KSS97_RS24825 (KSS97_24825) - 5563726..5564742 (+) 1017 WP_030140268.1 outer membrane protein assembly factor BamD -
  KSS97_RS24830 (KSS97_24830) - 5564865..5565098 (+) 234 WP_030140269.1 PP0621 family protein -
  KSS97_RS24835 (KSS97_24835) pilS 5565088..5566677 (+) 1590 WP_198798123.1 nitrogen regulation protein NR(II) Regulator
  KSS97_RS24840 (KSS97_24840) pilR 5566674..5568020 (+) 1347 WP_030140271.1 sigma-54 dependent transcriptional regulator Regulator
  KSS97_RS24845 (KSS97_24845) - 5568412..5568555 (+) 144 WP_217860366.1 hypothetical protein -
  KSS97_RS24850 (KSS97_24850) thiO 5568760..5569860 (-) 1101 WP_217860367.1 glycine oxidase ThiO -
  KSS97_RS24855 (KSS97_24855) - 5569912..5570316 (-) 405 WP_198798121.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58607.42 Da        Isoelectric Point: 7.3361

>NTDB_id=578817 KSS97_RS24835 WP_198798123.1 5565088..5566677(+) (pilS) [Pseudomonas alvandae strain SWRI17]
MSAEAPLPRVKQAQRLLRLYHLYRLSIGITLVLLISSNMDNRLLEFANDDLLRSGSWLYLVLNILLVVFLENTRRPAQLF
GLALTDVLLLSWLFFVAGGAPSAIGNLIIVSVAISNTLLRGRIGLLIAAVATLGIVGSTFVLGLSDSSRPSSYLQAGTLG
ALCFAAALLVQRLTRRLEASETLAEQKASEVLSLEALNALILQRMRTGILVLDRQRRVQLANESALNLLGMHDLVGQRID
DYSSALVERLQGWLNNPSLRPQSLTISSTGLTLQPSFIALGAEDQQQILIFLEDLAQVAQHAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLRESEELNDADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTAPQRLDLRSCLEQFVRQARESAEGH
QQLHLSIDPGDYITLMDPDQLTQVLDNLLRNAWRHSALAHDKAEAWLKLFIDPHSQLATLDIIDNGPGVTPDQQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQI

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=578817 KSS97_RS24835 WP_198798123.1 5565088..5566677(+) (pilS) [Pseudomonas alvandae strain SWRI17]
GTGAGCGCTGAAGCCCCGCTCCCTCGCGTCAAACAGGCGCAGCGCCTGCTGCGTCTGTATCACCTGTACCGCCTCAGCAT
CGGCATCACCCTGGTGCTGCTGATTTCCAGCAACATGGATAACCGCCTGCTGGAGTTCGCCAACGACGATCTGCTGCGCA
GCGGCAGCTGGTTATACCTGGTACTGAACATCCTGCTGGTGGTGTTCCTGGAAAACACCCGTCGTCCTGCCCAGTTGTTC
GGCCTGGCCTTGACCGACGTCCTGTTGCTGTCGTGGCTGTTCTTCGTCGCGGGCGGCGCCCCCAGCGCCATTGGCAACCT
GATCATCGTCTCGGTGGCGATCAGCAATACCTTGCTGCGCGGCCGGATCGGCCTGTTGATTGCCGCCGTCGCCACCCTGG
GCATCGTTGGCTCGACGTTCGTGCTCGGTCTCAGCGATTCGAGCCGACCCAGCAGCTATCTGCAAGCAGGCACCCTGGGC
GCCCTGTGCTTCGCCGCCGCGTTGCTGGTGCAACGCCTGACCCGACGACTGGAAGCCAGCGAAACCCTGGCCGAGCAAAA
AGCCAGCGAAGTGCTCAGCCTCGAAGCCCTCAATGCGCTGATCCTGCAGCGCATGCGCACCGGCATCCTGGTCCTGGATC
GCCAACGCAGAGTTCAGTTGGCCAACGAAAGCGCCTTGAACCTGCTGGGCATGCATGACCTGGTCGGCCAACGGATCGAC
GATTATTCCAGCGCCTTGGTCGAGCGATTGCAGGGGTGGTTGAACAACCCCAGCCTGCGCCCGCAAAGCCTGACCATCAG
CAGCACGGGCCTGACCCTGCAACCCAGCTTCATCGCCCTCGGGGCAGAGGATCAGCAACAGATCCTGATATTTCTCGAAG
ACCTGGCCCAGGTGGCCCAACACGCCCAGCAATTGAAGCTGGCATCGTTGGGGCGTCTCACCGCCGGTATCGCCCATGAA
ATCCGCAATCCGCTGGGGGCAATCAGCCACGCCGCGCAATTGCTGCGCGAGTCCGAGGAACTGAACGACGCGGACCGGCG
TCTGACGCAGATTATTCAAGATCACTCCCAACGAATGAATCGCGTCATCGAAAACGTCCTGCAACTGTCCCGTCGCCAGC
AAACCGCCCCCCAACGCCTGGATCTGCGTAGCTGCCTCGAGCAATTCGTCCGGCAGGCCCGCGAAAGCGCGGAAGGACAC
CAACAACTGCACCTGAGCATCGACCCCGGCGACTACATCACGCTCATGGACCCCGACCAACTGACCCAAGTGCTCGACAA
CCTGTTGCGCAACGCCTGGCGCCACAGCGCGCTGGCCCATGACAAGGCCGAGGCCTGGTTGAAGCTGTTCATCGATCCCC
ATAGCCAACTGGCCACGCTGGACATCATCGACAACGGCCCTGGCGTAACGCCGGACCAGCAGGCGCACCTGTTCGAACCT
TTTTTCACCACCAGCAGCCAAGGCACCGGCCTTGGGCTCTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGTTGCTTCCGCATCACCTTTGCTCACGGACGGAAACAGATTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.039

97.921

0.588