Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KSS94_RS02760 Genome accession   NZ_CP077076
Coordinates   619468..620013 (+) Length   181 a.a.
NCBI ID   WP_217841544.1    Uniprot ID   -
Organism   Pseudomonas fakonensis strain COW40     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 614468..625013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSS94_RS02745 (KSS94_02745) bfr 614525..614989 (+) 465 WP_003257116.1 bacterioferritin -
  KSS94_RS02750 (KSS94_02750) uvrA 615102..617936 (-) 2835 WP_217841542.1 excinuclease ABC subunit UvrA -
  KSS94_RS02755 (KSS94_02755) - 618064..619458 (+) 1395 WP_217841543.1 MFS transporter -
  KSS94_RS02760 (KSS94_02760) ssb 619468..620013 (+) 546 WP_217841544.1 single-stranded DNA-binding protein Machinery gene
  KSS94_RS02765 (KSS94_02765) fdnG 620486..623554 (+) 3069 WP_217841545.1 formate dehydrogenase-N subunit alpha -
  KSS94_RS02770 (KSS94_02770) fdxH 623554..624504 (+) 951 WP_217841546.1 formate dehydrogenase subunit beta -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20019.10 Da        Isoelectric Point: 5.9286

>NTDB_id=578701 KSS94_RS02760 WP_217841544.1 619468..620013(+) (ssb) [Pseudomonas fakonensis strain COW40]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQGQQGGGDQYNQGGGNYGGGQQQQYNQAPPRQQAQRPQQAPQRPA
PQQPAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=578701 KSS94_RS02760 WP_217841544.1 619468..620013(+) (ssb) [Pseudomonas fakonensis strain COW40]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGTACCTGCGGTCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACCGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAAT
GGCACCGTGTGTCGCTGTTCGGCAAGGTCGCTGAAATTGCCGGCGAGTACCTGCGCAAAGGTTCGCAGTGCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGACATCAACGGCAC
CATGCAGCTGCTCGGTGGCCGTCCGCAGGGCCAGCAAGGCGGCGGCGACCAGTACAACCAGGGTGGTGGCAACTACGGTG
GCGGCCAGCAGCAACAGTACAACCAGGCCCCGCCACGCCAGCAGGCCCAGCGCCCGCAACAGGCCCCGCAGCGCCCGGCG
CCGCAACAGCCGGCCCCGCAGCCAGCCGCTGACTTCGACAGCTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.284

100

0.569
  ssb Glaesserella parasuis strain SC1401

47.644

100

0.503
  ssb Neisseria meningitidis MC58

48.108

100

0.492
  ssb Neisseria gonorrhoeae MS11

48.087

100

0.486