Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   SPN032672_RS04670 Genome accession   NC_021003
Coordinates   874314..874976 (+) Length   220 a.a.
NCBI ID   WP_000649965.1    Uniprot ID   -
Organism   Streptococcus pneumoniae SPN032672     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 869314..879976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPN032672_RS04640 tnpB 869881..870114 (+) 234 WP_000376908.1 IS66 family insertion sequence element accessory protein TnpB -
  SPN032672_RS04645 - 870250..870537 (-) 288 Protein_864 transposase -
  SPN032672_RS04650 - 870510..871048 (+) 539 Protein_865 transposase -
  SPN032672_RS04655 cysK 871123..872043 (-) 921 WP_000029860.1 cysteine synthase A -
  SPN032672_RS04660 - 872328..872963 (-) 636 WP_000395740.1 YigZ family protein -
  SPN032672_RS04665 comFA/cflA 873019..874317 (+) 1299 WP_000867610.1 DEAD/DEAH box helicase Machinery gene
  SPN032672_RS04670 comFC/cflB 874314..874976 (+) 663 WP_000649965.1 ComF family protein Machinery gene
  SPN032672_RS04675 hpf 875056..875604 (+) 549 WP_000599104.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  SPN032672_RS04680 - 875740..877713 (+) 1974 WP_000715107.1 DHH family phosphoesterase -
  SPN032672_RS04685 rplI 877710..878162 (+) 453 WP_000864220.1 50S ribosomal protein L9 -
  SPN032672_RS04690 dnaB 878206..879558 (+) 1353 WP_000852486.1 replicative DNA helicase -
  SPN032672_RS04695 - 879560..879826 (+) 267 WP_001278167.1 Veg family protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25231.11 Da        Isoelectric Point: 7.7116

>NTDB_id=57864 SPN032672_RS04670 WP_000649965.1 874314..874976(+) (comFC/cflB) [Streptococcus pneumoniae SPN032672]
MKCLLCGQTMKTVLTFSSLLLLRNDDSCLCSDCDSTFERIGEENCPNCMKTELSTKCQACQFWCKEGVEVSHRAIFTYNQ
AMKDFFSRYKFDGDFLLRKVFASFLSEELKKYKEYQFVVIPLSPDRYANRGFNQVEGLVEAAGFEYLDLLEKREERASSS
KNRSERLGTELPFFIKSGVTIPKKILLIDDIYTTGATINRVKKLLEEAGAKDVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=57864 SPN032672_RS04670 WP_000649965.1 874314..874976(+) (comFC/cflB) [Streptococcus pneumoniae SPN032672]
ATGAAGTGCTTGTTATGTGGGCAGACTATGAAGACTGTTTTAACTTTTAGTAGTCTCTTACTTCTGAGGAATGATGACTC
TTGTCTTTGTTCAGACTGTGATTCTACTTTTGAAAGAATTGGGGAAGAGAACTGTCCAAATTGTATGAAAACAGAGTTGT
CAACAAAGTGTCAAGCTTGTCAATTTTGGTGTAAAGAAGGAGTTGAAGTCAGTCATAGAGCGATTTTTACTTACAATCAA
GCTATGAAGGATTTTTTCAGTCGGTATAAGTTTGATGGAGACTTCCTGTTAAGAAAAGTTTTCGCTTCATTTTTAAGTGA
GGAGTTGAAAAAGTACAAAGAGTATCAATTTGTTGTAATTCCCCTAAGTCCTGATAGATATGCTAACAGAGGATTTAATC
AGGTTGAGGGCTTGGTAGAGGCAGCAGGCTTTGAGTATCTAGATTTATTAGAGAAAAGAGAAGAGAGAGCCAGTTCTTCT
AAAAATCGTTCAGAGCGCTTGGGGACAGAACTTCCTTTCTTTATTAAAAGTGGAGTCACTATTCCTAAAAAAATCCTACT
TATAGATGATATCTATACTACAGGAGCAACTATAAATCGTGTTAAGAAACTGTTGGAAGAAGCTGGTGCTAAGGATGTAA
AAACATTTTCCCTTGTAAGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(153-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

99.091

100

0.991
  comFC/cflB Streptococcus pneumoniae Rx1

98.636

100

0.986
  comFC/cflB Streptococcus pneumoniae D39

98.636

100

0.986
  comFC/cflB Streptococcus pneumoniae R6

98.636

100

0.986
  comFC/cflB Streptococcus mitis SK321

91.364

100

0.914
  comFC/cflB Streptococcus mitis NCTC 12261

90.909

100

0.909

Multiple sequence alignment