Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KSS95_RS00435 Genome accession   NZ_CP077073
Coordinates   88811..89359 (-) Length   182 a.a.
NCBI ID   WP_186662108.1    Uniprot ID   -
Organism   Pseudomonas muyukensis strain COW39     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 83811..94359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSS95_RS00420 (KSS95_00420) - 83835..84491 (-) 657 WP_217850641.1 formate dehydrogenase subunit gamma -
  KSS95_RS00425 (KSS95_00425) fdxH 84488..85438 (-) 951 WP_217850643.1 formate dehydrogenase subunit beta -
  KSS95_RS00430 (KSS95_00430) fdnG 85438..88506 (-) 3069 WP_217850645.1 formate dehydrogenase-N subunit alpha -
  KSS95_RS00435 (KSS95_00435) ssb 88811..89359 (-) 549 WP_186662108.1 single-stranded DNA-binding protein Machinery gene
  KSS95_RS00440 (KSS95_00440) - 89369..90763 (-) 1395 WP_217850647.1 MFS transporter -
  KSS95_RS00445 (KSS95_00445) uvrA 90893..93727 (+) 2835 WP_217850649.1 excinuclease ABC subunit UvrA -
  KSS95_RS00450 (KSS95_00450) bfr 93855..94319 (-) 465 WP_217850656.1 bacterioferritin -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20173.27 Da        Isoelectric Point: 5.9286

>NTDB_id=578629 KSS95_RS00435 WP_186662108.1 88811..89359(-) (ssb) [Pseudomonas muyukensis strain COW39]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQGQQQGGDPYNQGGGNYNQGGGQQQQYNQAPRQQAPRPQQAPQRP
APQQPAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=578629 KSS95_RS00435 WP_186662108.1 88811..89359(-) (ssb) [Pseudomonas muyukensis strain COW39]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGCACCTGCGGTCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACCGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGCTGTTCGGCAAGGTCGCCGAGATCGCCGGCGAGTACCTGCGCAAAGGTTCGCAGTGCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGACATCAACGGCAC
CATGCAGCTGCTCGGCGGTCGTCCGCAGGGCCAGCAGCAGGGCGGTGACCCGTACAACCAGGGTGGCGGCAACTACAACC
AAGGTGGCGGCCAGCAGCAACAGTACAACCAGGCTCCGCGTCAGCAGGCGCCACGCCCGCAGCAGGCACCGCAGCGTCCT
GCGCCACAGCAGCCGGCTCCGCAGCCAGCCGCTGACTTCGACAGCTTCGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.284

100

0.566
  ssb Glaesserella parasuis strain SC1401

50

100

0.522
  ssb Neisseria gonorrhoeae MS11

48.649

100

0.495
  ssb Neisseria meningitidis MC58

48.649

100

0.495