Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KQ257_RS13525 Genome accession   NZ_CP076817
Coordinates   2811287..2811613 (+) Length   108 a.a.
NCBI ID   WP_002126519.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain UC24137     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2796554..2822921 2811287..2811613 within 0


Gene organization within MGE regions


Location: 2796554..2822921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ257_RS13435 (KQ257_13385) pcnB 2796554..2798017 (+) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  KQ257_RS13440 (KQ257_13390) folK 2798014..2798496 (+) 483 WP_000219221.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  KQ257_RS13445 (KQ257_13395) panB 2798542..2799351 (+) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  KQ257_RS13450 (KQ257_13400) panC 2799355..2800203 (+) 849 WP_004748285.1 pantoate--beta-alanine ligase -
  KQ257_RS13455 (KQ257_13405) rapZ 2800226..2801077 (+) 852 WP_000821671.1 RNase adapter RapZ -
  KQ257_RS13460 (KQ257_13410) - 2801074..2801343 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -
  KQ257_RS13465 (KQ257_13415) yjgA 2801346..2801882 (+) 537 WP_000124014.1 ribosome biogenesis factor YjgA -
  KQ257_RS13470 (KQ257_13420) - 2801944..2803164 (-) 1221 Protein_2620 AMP-binding protein -
  KQ257_RS13475 (KQ257_13425) - 2803378..2804634 (+) 1257 WP_004745119.1 tyrosine-type recombinase/integrase -
  KQ257_RS13480 (KQ257_13430) - 2804706..2805566 (+) 861 WP_004745122.1 KilA-N domain-containing protein -
  KQ257_RS13485 (KQ257_13435) - 2806284..2806520 (+) 237 WP_004745124.1 AlpA family transcriptional regulator -
  KQ257_RS13490 (KQ257_13440) - 2806523..2806732 (+) 210 WP_004745125.1 helix-turn-helix domain-containing protein -
  KQ257_RS13495 (KQ257_13445) - 2806729..2807238 (+) 510 WP_004745126.1 BRO family protein -
  KQ257_RS13500 (KQ257_13450) - 2807231..2807599 (+) 369 WP_004745127.1 hypothetical protein -
  KQ257_RS13505 (KQ257_13455) - 2807610..2807933 (+) 324 WP_004745129.1 hypothetical protein -
  KQ257_RS13510 - 2807942..2808325 (+) 384 WP_223235258.1 hypothetical protein -
  KQ257_RS13515 (KQ257_13465) - 2808318..2808611 (+) 294 WP_004745131.1 hypothetical protein -
  KQ257_RS13520 (KQ257_13470) - 2808604..2811033 (+) 2430 WP_004745132.1 DUF927 domain-containing protein -
  KQ257_RS13525 (KQ257_13475) ssb 2811287..2811613 (+) 327 WP_002126519.1 single-stranded DNA-binding protein Machinery gene
  KQ257_RS13530 (KQ257_13480) - 2812648..2813073 (-) 426 Protein_2632 AMP-binding protein -
  KQ257_RS13535 (KQ257_13485) thrS 2813485..2815407 (+) 1923 WP_001121792.1 threonine--tRNA ligase -
  KQ257_RS13540 (KQ257_13490) infC 2815413..2815964 (+) 552 WP_012297364.1 translation initiation factor IF-3 -
  KQ257_RS13545 (KQ257_13495) - 2816170..2816790 (+) 621 WP_000566575.1 glutathione S-transferase N-terminal domain-containing protein -
  KQ257_RS13550 (KQ257_13500) - 2816843..2817271 (+) 429 WP_004748276.1 YqaA family protein -
  KQ257_RS13555 (KQ257_13505) nreB 2817311..2818561 (-) 1251 WP_001169059.1 nickel resistance MFS transporter NreB -
  KQ257_RS13560 - 2818703..2818822 (+) 120 Protein_2638 hypothetical protein -
  KQ257_RS13565 (KQ257_13510) rpmI 2818810..2819004 (+) 195 WP_001096359.1 50S ribosomal protein L35 -
  KQ257_RS13570 (KQ257_13515) rplT 2819016..2819375 (+) 360 WP_000124858.1 50S ribosomal protein L20 -
  KQ257_RS13575 (KQ257_13520) - 2819466..2820023 (+) 558 WP_004748273.1 NADAR family protein -
  KQ257_RS13580 (KQ257_13525) - 2820082..2820585 (+) 504 WP_000803551.1 GNAT family N-acetyltransferase -
  KQ257_RS13585 (KQ257_13530) - 2820592..2820984 (-) 393 Protein_2643 hypothetical protein -
  KQ257_RS13590 (KQ257_13535) - 2821027..2822235 (-) 1209 WP_031974690.1 IS256 family transposase -
  KQ257_RS13595 (KQ257_13540) - 2822301..2822921 (-) 621 Protein_2645 hypothetical protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12234.94 Da        Isoelectric Point: 10.2394

>NTDB_id=578249 KQ257_RS13525 WP_002126519.1 2811287..2811613(+) (ssb) [Acinetobacter baumannii strain UC24137]
MPNVNKVTVMGVLGRDPETKQFPNGGSVTTFSVATTEFWKDKTTGERKEATEWHRITTSNRLAEIASKYLKKGGKVYIEG
SLRTRKWKDSKGAEKEITEIRADEMQLL

Nucleotide


Download         Length: 327 bp        

>NTDB_id=578249 KQ257_RS13525 WP_002126519.1 2811287..2811613(+) (ssb) [Acinetobacter baumannii strain UC24137]
ATGCCAAACGTAAACAAAGTAACTGTGATGGGTGTACTAGGTCGTGACCCTGAAACTAAACAATTTCCCAACGGCGGAAG
CGTTACCACATTCAGCGTTGCAACTACTGAGTTTTGGAAAGACAAGACTACAGGCGAGCGTAAAGAAGCTACAGAGTGGC
ATAGAATCACCACCAGCAACCGTTTAGCCGAGATTGCCAGTAAGTACCTCAAGAAAGGCGGAAAGGTGTATATCGAAGGC
TCATTGCGTACAAGGAAGTGGAAGGACAGCAAAGGGGCGGAAAAGGAAATAACCGAGATTCGAGCAGATGAGATGCAATT
GCTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

55.556

100

0.556
  ssb Neisseria gonorrhoeae MS11

51.887

98.148

0.509
  ssb Neisseria meningitidis MC58

51.887

98.148

0.509
  ssb Vibrio cholerae strain A1552

54.639

89.815

0.491