Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KQ257_RS10545 Genome accession   NZ_CP076817
Coordinates   2180362..2180688 (-) Length   108 a.a.
NCBI ID   WP_002126519.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain UC24137     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2178994..2199835 2180362..2180688 within 0


Gene organization within MGE regions


Location: 2178994..2199835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ257_RS10540 (KQ257_10505) - 2178994..2179257 (+) 264 WP_000018128.1 metal/formaldehyde-sensitive transcriptional repressor -
  KQ257_RS10545 (KQ257_10510) ssb 2180362..2180688 (-) 327 WP_002126519.1 single-stranded DNA-binding protein Machinery gene
  KQ257_RS10550 (KQ257_10515) - 2180942..2183371 (-) 2430 WP_004745132.1 DUF927 domain-containing protein -
  KQ257_RS10555 (KQ257_10520) - 2183364..2183657 (-) 294 WP_004745131.1 hypothetical protein -
  KQ257_RS10560 - 2183650..2184033 (-) 384 WP_223235258.1 hypothetical protein -
  KQ257_RS10565 (KQ257_10530) - 2184042..2184365 (-) 324 WP_004745129.1 hypothetical protein -
  KQ257_RS10570 (KQ257_10535) - 2184376..2184744 (-) 369 WP_004745127.1 hypothetical protein -
  KQ257_RS10575 (KQ257_10540) - 2184737..2185246 (-) 510 WP_004745126.1 BRO family protein -
  KQ257_RS10580 (KQ257_10545) - 2185243..2185452 (-) 210 WP_004745125.1 helix-turn-helix domain-containing protein -
  KQ257_RS10585 (KQ257_10550) - 2185455..2185691 (-) 237 WP_004745124.1 AlpA family transcriptional regulator -
  KQ257_RS10590 (KQ257_10555) - 2186409..2187269 (-) 861 WP_004745122.1 KilA-N domain-containing protein -
  KQ257_RS10595 (KQ257_10560) - 2187341..2188597 (-) 1257 WP_004745119.1 tyrosine-type recombinase/integrase -
  KQ257_RS10600 (KQ257_10565) mnmE 2188804..2190159 (-) 1356 WP_000556128.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE -
  KQ257_RS10605 (KQ257_10570) yidC 2190250..2192010 (-) 1761 WP_001188089.1 membrane protein insertase YidC -
  KQ257_RS10610 (KQ257_10575) yidD 2192016..2192336 (-) 321 WP_000251652.1 membrane protein insertion efficiency factor YidD -
  KQ257_RS10615 (KQ257_10580) rnpA 2192347..2192739 (-) 393 WP_001240377.1 ribonuclease P protein component -
  KQ257_RS10620 (KQ257_10585) rpmH 2192769..2192903 (-) 135 WP_000831329.1 50S ribosomal protein L34 -
  KQ257_RS10625 (KQ257_10590) dnaA 2193574..2194971 (+) 1398 WP_000964771.1 chromosomal replication initiator protein DnaA -
  KQ257_RS10630 (KQ257_10595) dnaN 2195069..2196217 (+) 1149 WP_001237348.1 DNA polymerase III subunit beta -
  KQ257_RS10635 (KQ257_10600) recF 2196232..2197314 (+) 1083 WP_000550814.1 DNA replication/repair protein RecF -
  KQ257_RS10640 (KQ257_10605) gyrB 2197367..2199835 (+) 2469 WP_000093729.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12234.94 Da        Isoelectric Point: 10.2394

>NTDB_id=578232 KQ257_RS10545 WP_002126519.1 2180362..2180688(-) (ssb) [Acinetobacter baumannii strain UC24137]
MPNVNKVTVMGVLGRDPETKQFPNGGSVTTFSVATTEFWKDKTTGERKEATEWHRITTSNRLAEIASKYLKKGGKVYIEG
SLRTRKWKDSKGAEKEITEIRADEMQLL

Nucleotide


Download         Length: 327 bp        

>NTDB_id=578232 KQ257_RS10545 WP_002126519.1 2180362..2180688(-) (ssb) [Acinetobacter baumannii strain UC24137]
ATGCCAAACGTAAACAAAGTAACTGTGATGGGTGTACTAGGTCGTGACCCTGAAACTAAACAATTTCCCAACGGCGGAAG
CGTTACCACATTCAGCGTTGCAACTACTGAGTTTTGGAAAGACAAGACTACAGGCGAGCGTAAAGAAGCTACAGAGTGGC
ATAGAATCACCACCAGCAACCGTTTAGCCGAGATTGCCAGTAAGTACCTCAAGAAAGGCGGAAAGGTGTATATCGAAGGC
TCATTGCGTACAAGGAAGTGGAAGGACAGCAAAGGGGCGGAAAAGGAAATAACCGAGATTCGAGCAGATGAGATGCAATT
GCTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

55.556

100

0.556
  ssb Neisseria gonorrhoeae MS11

51.887

98.148

0.509
  ssb Neisseria meningitidis MC58

51.887

98.148

0.509
  ssb Vibrio cholerae strain A1552

54.639

89.815

0.491