Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   KQ253_RS16595 Genome accession   NZ_CP076812
Coordinates   3412722..3413852 (-) Length   376 a.a.
NCBI ID   WP_031971973.1    Uniprot ID   A0A427R5R0
Organism   Acinetobacter baumannii strain UC23022     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3407722..3418852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ253_RS16570 (KQ253_16510) - 3407897..3408661 (-) 765 WP_000786954.1 AraC family transcriptional regulator -
  KQ253_RS16575 (KQ253_16515) - 3408683..3409897 (-) 1215 WP_000372838.1 MFS transporter -
  KQ253_RS16580 (KQ253_16520) - 3410034..3410684 (+) 651 WP_001984979.1 TetR/AcrR family transcriptional regulator -
  KQ253_RS16585 (KQ253_16525) - 3410790..3411710 (+) 921 WP_000084546.1 DMT family transporter -
  KQ253_RS16590 (KQ253_16530) - 3412102..3412671 (-) 570 WP_000633612.1 Sua5/YciO/YrdC/YwlC family protein -
  KQ253_RS16595 (KQ253_16535) dprA 3412722..3413852 (-) 1131 WP_031971973.1 DNA-processing protein DprA Machinery gene
  KQ253_RS16600 (KQ253_16540) tsaP 3413873..3415027 (-) 1155 WP_000755271.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  KQ253_RS16605 (KQ253_16545) def 3415150..3415680 (+) 531 WP_001196539.1 peptide deformylase -
  KQ253_RS16610 (KQ253_16550) - 3415717..3416145 (+) 429 WP_000231981.1 DUF2946 family protein -
  KQ253_RS16615 (KQ253_16555) - 3416218..3418332 (+) 2115 WP_001120681.1 TonB-dependent copper receptor -
  KQ253_RS16620 (KQ253_16560) - 3418386..3418592 (+) 207 WP_000182542.1 hypothetical protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 41943.48 Da        Isoelectric Point: 6.4055

>NTDB_id=578141 KQ253_RS16595 WP_031971973.1 3412722..3413852(-) (dprA) [Acinetobacter baumannii strain UC23022]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIIDYFGNCEKATQPDGLAKWSSLGLHANHLKRVNEFQTPQGQTQFEQLVQQV
CQYTDFILTPDDSGYPTQLLPYTDHPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFFISSGLAYG
IDEAAHQGASTHQRTIAVTGTGLDTTYPAQNKKLAEYILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILIDHPEQIIEDLALPTQWQSQQQNQTEEANTNTPEIP
EHLIDLYQSLDWVGQNIDQLVVHHNIPVSELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=578141 KQ253_RS16595 WP_031971973.1 3412722..3413852(-) (dprA) [Acinetobacter baumannii strain UC23022]
ATGCTCACTCAACTTTCTTCACACCACTACCACACACTTAAAGTGTGGTATTTGGTGCAGCACTCTTTAGTCAGCTTTAA
AAAAATTATTGATTATTTTGGAAATTGTGAAAAAGCCACTCAACCTGATGGTTTAGCAAAGTGGTCCTCTCTGGGGCTAC
ATGCTAATCACTTAAAACGTGTAAACGAATTTCAAACGCCCCAAGGTCAGACGCAGTTTGAACAACTTGTACAACAAGTT
TGTCAGTATACGGATTTTATTTTAACGCCGGATGACTCTGGCTATCCCACTCAATTACTTCCTTATACAGATCATCCACC
TATTATTTTTGGGAAAGGTCAAGCGCAAGCTTTATTGCAACCTCAGATTGCGATTGTCGGTAGCCGAAAACCAAGCCCAC
ATGGACGACAGGTCGCTTATGATTTTGCTTACTACTTAAGTGAAAAGGGCTTTTTCATTAGTAGTGGTCTGGCTTATGGC
ATTGATGAAGCCGCACATCAAGGTGCATCTACTCATCAACGTACCATTGCAGTGACGGGTACGGGCTTAGACACTACTTA
TCCAGCTCAAAATAAAAAACTTGCAGAATATATTTTGGCTCAAAACGGCGCCATTATTACTGAGTTTTTACCGGGTACAC
CGCCATTACAACAGCATTTTCCACGTAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGCGTTTTGGTGGTAGAAGCGACA
TTAAAAAGTGGCTCACTCATCACGGCCAATAAAGCTGCTGAACAAGGTAAAACCGTATTCGCGATTCCGGGCCATATTTA
TAGCGAGTTTCATCAAGGATGCCATCAACTTATCCGTGAAGGTGCAATTTTAATCGACCATCCTGAACAGATTATTGAGG
ATCTTGCTTTACCAACCCAATGGCAAAGTCAGCAACAAAATCAAACTGAAGAAGCTAATACGAATACTCCAGAAATTCCT
GAGCATTTGATTGACCTTTATCAGTCTTTAGACTGGGTGGGACAAAATATTGACCAACTTGTAGTTCACCATAATATTCC
AGTTTCTGAACTGACCTCTTCACTAATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGGCTGTATTTACGTT
GTCGTTCTTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(328-369)

DNA recombination-mediator protein A (DNA_processg_A)

(87-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A427R5R0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

98.404

100

0.984
  dprA Acinetobacter baumannii strain A118

98.138

100

0.981
  dprA Acinetobacter baylyi ADP1

70.079

100

0.71
  dprA Vibrio cholerae strain A1552

43.202

88.032

0.38