Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   KQ253_RS13865 Genome accession   NZ_CP076812
Coordinates   2844056..2844874 (-) Length   272 a.a.
NCBI ID   WP_000149377.1    Uniprot ID   A0A009ITJ0
Organism   Acinetobacter baumannii strain UC23022     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2839056..2849874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ253_RS13850 (KQ253_13770) pilE 2839273..2839698 (-) 426 WP_000788343.1 type IV pilin protein Machinery gene
  KQ253_RS13855 (KQ253_13775) pilY2 2839695..2840177 (-) 483 WP_001046422.1 type IV pilin protein Machinery gene
  KQ253_RS13860 (KQ253_13780) pilY1 2840190..2844044 (-) 3855 WP_000768952.1 PilC/PilY family type IV pilus protein Machinery gene
  KQ253_RS13865 (KQ253_13785) pilX 2844056..2844874 (-) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  KQ253_RS13870 (KQ253_13790) pilW 2844871..2845872 (-) 1002 WP_000079202.1 PilW family protein Machinery gene
  KQ253_RS13875 (KQ253_13795) pilV 2845873..2846433 (-) 561 WP_094474343.1 type IV pilus modification protein PilV Machinery gene
  KQ253_RS13880 (KQ253_13800) fimU 2846427..2846900 (-) 474 WP_001214057.1 GspH/FimT family pseudopilin Machinery gene
  KQ253_RS13885 (KQ253_13805) ispH 2847070..2848020 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  KQ253_RS13890 (KQ253_13810) gmk 2848143..2848772 (+) 630 WP_000015937.1 guanylate kinase -
  KQ253_RS13895 (KQ253_13815) rpoZ 2848845..2849123 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  KQ253_RS13900 (KQ253_13820) - 2849162..2849292 (+) 131 Protein_2732 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28858.70 Da        Isoelectric Point: 5.6905

>NTDB_id=578128 KQ253_RS13865 WP_000149377.1 2844056..2844874(-) (pilX) [Acinetobacter baumannii strain UC23022]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMPDIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=578128 KQ253_RS13865 WP_000149377.1 2844056..2844874(-) (pilX) [Acinetobacter baumannii strain UC23022]
ATGACCCATTTAAATTATAAAAATATCAAAGGTCGATCTAAGGAAACAGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATCGTTATCTCTGTAGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGTGCAGCACTTAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACCTCGAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGGGCTGGCAGCGCCAATAATGCTGTGGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGCCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGTATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCATCAACCTCTTTAGAAACTT
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009ITJ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989