Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   KQ253_RS13880 Genome accession   NZ_CP076812
Coordinates   2846427..2846900 (-) Length   157 a.a.
NCBI ID   WP_001214057.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain UC23022     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2841427..2851900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ253_RS13865 (KQ253_13785) pilX 2844056..2844874 (-) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  KQ253_RS13870 (KQ253_13790) pilW 2844871..2845872 (-) 1002 WP_000079202.1 PilW family protein Machinery gene
  KQ253_RS13875 (KQ253_13795) pilV 2845873..2846433 (-) 561 WP_094474343.1 type IV pilus modification protein PilV Machinery gene
  KQ253_RS13880 (KQ253_13800) fimU 2846427..2846900 (-) 474 WP_001214057.1 GspH/FimT family pseudopilin Machinery gene
  KQ253_RS13885 (KQ253_13805) ispH 2847070..2848020 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  KQ253_RS13890 (KQ253_13810) gmk 2848143..2848772 (+) 630 WP_000015937.1 guanylate kinase -
  KQ253_RS13895 (KQ253_13815) rpoZ 2848845..2849123 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  KQ253_RS13900 (KQ253_13820) - 2849162..2849292 (+) 131 Protein_2732 hypothetical protein -
  KQ253_RS13905 (KQ253_13825) - 2849333..2851438 (+) 2106 WP_001117590.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16863.51 Da        Isoelectric Point: 8.5355

>NTDB_id=578131 KQ253_RS13880 WP_001214057.1 2846427..2846900(-) (fimU) [Acinetobacter baumannii strain UC23022]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLEIKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=578131 KQ253_RS13880 WP_001214057.1 2846427..2846900(-) (fimU) [Acinetobacter baumannii strain UC23022]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAATTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGTCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994