Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   KQ253_RS13870 Genome accession   NZ_CP076812
Coordinates   2844871..2845872 (-) Length   333 a.a.
NCBI ID   WP_000079202.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain UC23022     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2839871..2850872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ253_RS13860 (KQ253_13780) pilY1 2840190..2844044 (-) 3855 WP_000768952.1 PilC/PilY family type IV pilus protein Machinery gene
  KQ253_RS13865 (KQ253_13785) pilX 2844056..2844874 (-) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  KQ253_RS13870 (KQ253_13790) pilW 2844871..2845872 (-) 1002 WP_000079202.1 PilW family protein Machinery gene
  KQ253_RS13875 (KQ253_13795) pilV 2845873..2846433 (-) 561 WP_094474343.1 type IV pilus modification protein PilV Machinery gene
  KQ253_RS13880 (KQ253_13800) fimU 2846427..2846900 (-) 474 WP_001214057.1 GspH/FimT family pseudopilin Machinery gene
  KQ253_RS13885 (KQ253_13805) ispH 2847070..2848020 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  KQ253_RS13890 (KQ253_13810) gmk 2848143..2848772 (+) 630 WP_000015937.1 guanylate kinase -
  KQ253_RS13895 (KQ253_13815) rpoZ 2848845..2849123 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  KQ253_RS13900 (KQ253_13820) - 2849162..2849292 (+) 131 Protein_2732 hypothetical protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35838.56 Da        Isoelectric Point: 6.1010

>NTDB_id=578129 KQ253_RS13870 WP_000079202.1 2844871..2845872(-) (pilW) [Acinetobacter baumannii strain UC23022]
MAQSFISNKEQGFTLIELIVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYMTRDIRLLNYGNVVNPQL
TDTTPWGGIVLTGSTATNANNVNFIPKVDTNTYIPEALLSRGAGDTVSTVNNHWKGLSNIQNSSNAEVQSDQLTIQFIAP
TNMTNCEGMNVLAGDLIVQRYFLRVDNNGSSQQDYALACDANTPAVSATAQPDIVNGLGDAGQIILPRIDHFHVLLGAKN
AAGNFAYYTIPQYRVAAQAARDASPAVAAPRILSIQISVLARSTNNAQNKAIDPNQSFLMLDQTVHAADNRTRFLRRVYS
VTIALRNAMGETL

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=578129 KQ253_RS13870 WP_000079202.1 2844871..2845872(-) (pilW) [Acinetobacter baumannii strain UC23022]
ATGGCTCAATCATTTATTTCTAATAAAGAACAAGGTTTTACCTTGATTGAACTTATAGTCGCCTTAGCTTTAGGCCTAAT
ATTAGTGGCTGCTGCAACACAGCTATTTATTGGAGGGCTTTTATCCAGCCGATTGCAAAAGGCCAATGCTGAAATCCAGG
ACAGCGGTATTTTTGGTTTGGAATATATGACACGTGATATACGGCTTCTAAATTATGGAAATGTTGTAAATCCGCAATTA
ACAGATACAACGCCTTGGGGAGGTATTGTATTAACAGGTTCAACAGCAACAAATGCCAACAATGTTAATTTTATTCCAAA
AGTTGATACAAATACTTATATTCCGGAAGCGTTATTAAGCCGTGGTGCAGGTGATACGGTAAGTACAGTGAATAACCACT
GGAAAGGTCTTTCAAATATACAGAATAGTTCAAATGCTGAAGTACAAAGCGATCAGCTGACTATTCAATTCATTGCCCCG
ACCAATATGACTAATTGTGAAGGTATGAATGTGTTAGCGGGGGACCTAATAGTTCAACGGTATTTTTTACGTGTTGATAA
TAATGGTAGCTCTCAACAGGATTATGCACTTGCATGTGATGCGAATACCCCTGCGGTTAGTGCTACAGCTCAACCTGATA
TCGTTAATGGATTAGGAGATGCAGGGCAAATTATACTGCCTCGTATTGACCATTTTCATGTCTTATTAGGTGCGAAAAAC
GCAGCTGGTAATTTTGCTTATTACACAATTCCTCAGTATCGGGTGGCTGCACAAGCTGCTCGAGATGCGAGTCCAGCTGT
GGCTGCTCCAAGAATTCTGTCAATACAAATATCGGTATTAGCCCGTTCTACAAATAATGCTCAAAATAAGGCAATAGACC
CTAATCAGTCTTTTCTTATGCTAGATCAGACTGTGCATGCTGCCGATAACAGAACTCGCTTTTTGCGACGCGTATATAGC
GTGACAATTGCTTTACGCAATGCAATGGGGGAAACACTATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

98.498

100

0.985